Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HCN55_RS07900 Genome accession   NZ_CP050532
Coordinates   1511150..1511428 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis str. SMY     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1506150..1516428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCN55_RS07880 (HCN55_07885) panEB 1507337..1508248 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  HCN55_RS07885 (HCN55_07890) ampS 1508282..1509514 (-) 1233 WP_003232341.1 aminopeptidase -
  HCN55_RS07890 (HCN55_07895) ykpC 1509624..1509758 (-) 135 WP_003238865.1 protein YkpC -
  HCN55_RS07895 (HCN55_07900) mreBH 1509859..1510866 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  HCN55_RS07900 (HCN55_07905) abrB 1511150..1511428 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  HCN55_RS07905 (HCN55_07910) kinC 1511618..1512904 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  HCN55_RS07910 (HCN55_07915) ykqA 1512920..1513753 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  HCN55_RS07915 (HCN55_07920) ktrC 1513816..1514481 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  HCN55_RS07920 (HCN55_07925) ade 1514636..1516369 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=433736 HCN55_RS07900 WP_003244728.1 1511150..1511428(+) (abrB) [Bacillus subtilis subsp. subtilis str. SMY]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=433736 HCN55_RS07900 WP_003244728.1 1511150..1511428(+) (abrB) [Bacillus subtilis subsp. subtilis str. SMY]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576