Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HCN55_RS00205 Genome accession   NZ_CP050532
Coordinates   38118..38408 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis subsp. subtilis str. SMY     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 33118..43408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCN55_RS00165 (HCN55_00165) darA 33141..33470 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  HCN55_RS00170 (HCN55_00170) yaaR 33483..33923 (+) 441 WP_009966249.1 YaaR family protein -
  HCN55_RS00175 (HCN55_00175) holB 33935..34924 (+) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  HCN55_RS00180 (HCN55_00180) ricT 34927..35754 (+) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  HCN55_RS00185 (HCN55_00185) yabA 35769..36128 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  HCN55_RS00190 (HCN55_00190) trmNF 36187..36930 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HCN55_RS00195 (HCN55_00195) yazA 36917..37216 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  HCN55_RS00200 (HCN55_00200) rsmI 37191..38069 (+) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HCN55_RS00205 (HCN55_00205) abrB 38118..38408 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  HCN55_RS00210 (HCN55_00210) metG 38903..40897 (+) 1995 WP_003226758.1 methionine--tRNA ligase -
  HCN55_RS00215 (HCN55_00215) dayD 40976..41743 (+) 768 WP_003226756.1 TatD family hydrolase -
  HCN55_RS00220 (HCN55_00220) yabE 41899..43212 (+) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=433702 HCN55_RS00205 WP_003226760.1 38118..38408(-) (abrB) [Bacillus subtilis subsp. subtilis str. SMY]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=433702 HCN55_RS00205 WP_003226760.1 38118..38408(-) (abrB) [Bacillus subtilis subsp. subtilis str. SMY]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1