Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GM240_RS09015 Genome accession   NZ_CP050509
Coordinates   1841355..1843070 (+) Length   571 a.a.
NCBI ID   WP_098176764.1    Uniprot ID   A0AAX0S1U0
Organism   Peribacillus butanolivorans strain KJ40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1836355..1848070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM240_RS08990 (GM240_09000) - 1836418..1836651 (+) 234 WP_053346909.1 exodeoxyribonuclease VII small subunit -
  GM240_RS08995 (GM240_09005) - 1836653..1837546 (+) 894 WP_098176760.1 polyprenyl synthetase family protein -
  GM240_RS09000 (GM240_09010) dxs 1837798..1839690 (+) 1893 WP_098176761.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GM240_RS09005 (GM240_09015) - 1839695..1840522 (+) 828 WP_190271227.1 TlyA family RNA methyltransferase -
  GM240_RS09010 (GM240_09020) ahrC 1840883..1841332 (+) 450 WP_098176763.1 transcriptional regulator AhrC/ArgR -
  GM240_RS09015 (GM240_09025) recN 1841355..1843070 (+) 1716 WP_098176764.1 DNA repair protein RecN Machinery gene
  GM240_RS09020 (GM240_09030) spoIVB 1843233..1844525 (+) 1293 WP_053346903.1 SpoIVB peptidase -
  GM240_RS09025 (GM240_09035) spo0A 1844876..1845667 (+) 792 WP_056525307.1 sporulation transcription factor Spo0A -
  GM240_RS09030 (GM240_09040) - 1846313..1847653 (+) 1341 WP_263282031.1 DUF342 domain-containing protein -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64343.25 Da        Isoelectric Point: 5.1478

>NTDB_id=433557 GM240_RS09015 WP_098176764.1 1841355..1843070(+) (recN) [Peribacillus butanolivorans strain KJ40]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIDDDKHPVFAK
AEEFGLDMNDGMAILRRDISLSGKSVCRVNGKLVTIAILREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKVASAL
AEYQKLFKRYETASKQLNSLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSTIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEIMEYGAGIEEEVEKLQNRETHIAKLEKEIKSIKADLIVEAKNLSELRQTFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIESEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=433557 GM240_RS09015 WP_098176764.1 1841355..1843070(+) (recN) [Peribacillus butanolivorans strain KJ40]
TTGTTAACAGAACTTTCGATTAGGAATTTTGCGATCATTGACAGCTTGTCTGTTTCATTTGAAAAAGGCCTGACTGTATT
GACCGGCGAAACAGGGGCAGGGAAATCCATTATCATAGATGCCGTTCATTTATTGGTTGGTGGCCGTGGTTCGGCAGAGT
TTATTCGACATGGTGAGTCGAAGGCCGAAATAGAAGGGCTCTTTCAAATTGATGATGACAAACATCCGGTCTTTGCCAAG
GCTGAAGAATTTGGCTTGGATATGAATGATGGGATGGCTATCCTTCGAAGAGATATCTCACTTAGCGGCAAGAGCGTCTG
CCGGGTAAATGGAAAGCTCGTAACGATTGCAATTTTACGTGAGATAGGACGGACTTTGATAGATATACATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCACCTTCCTTTGCTTGACCAGTTCGGCGGTGAAAAAGTTGCTTCAGCTCTT
GCCGAATACCAAAAGTTATTTAAACGGTATGAAACAGCTTCTAAACAACTGAATAGTTTAAGTCAAAATGAACAGCAAAT
GGTTCATCGTCTCGATTTAATCCAGTTTCAATTCGATGAAATTCAGAAAGCGGATTTGAAACTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAAAAAATTAATAATTTCGAAAAAATTCATGAAGCGCTGCAAACCAGCTATAATGCTTTAAATGGA
GAGCAACATGCAATTGATTGGCTATCCGTGGCCATGAATAACCTAGAAGAAGCAGCGGGTCTCGATGAGGGTTTAAAAAA
TAGCTCGGAAACTGTTTCAAATAGCTACTTCCTTCTCGAAGAAGCGGTCTCGACCATCCGAGATCAGTTAGATTCTTTGG
ATTATGATACAGAACGAGTCGAATTTATTGAAAGTCGCCTTAATGAAATAAATCAATTAAAACGTAAATACGGACGGACC
ATCGAGGAAATAATGGAGTATGGTGCTGGGATTGAGGAAGAAGTCGAAAAGCTTCAAAATCGGGAAACCCATATAGCGAA
GCTTGAAAAAGAAATAAAATCGATTAAAGCTGATTTAATTGTTGAAGCAAAAAACCTGTCTGAACTTCGGCAAACATTCG
CACAGCAGTTAACAAAGAAAATACATCAAGAATTAAAAGATTTATACATGGAAAAAACAATTTTCGAACCGCATTTTCTT
CAAACAGCTTATACTTTCGATGAGTTATCAGACAGGGGAATTAATCAGTCGGGTCTGGATTCCATGGAGTTTTATATATC
CACCAATCCAGGAGAGCCGTTAAAACCTCTTTCGAAAATTGCTTCTGGCGGAGAGTTATCTAGGATTATGTTGGCTTTGA
AAAGTATTTTCTCCAAACATCAAGGCATTACTTCCATTATATTCGATGAGGTGGACACAGGTGTAAGCGGCAGGGTTGCA
CAATCTATTGCCGAAAAAATCTATAAAGTGGCAACGGGTTCCCAGGTACTTTGTATTTCACATTTACCACAGGTCGCGGC
AATGGCAGATACCCATTTATTTATTGCAAAAAATGTTAGAGCAGGACGAACCAATACTTCGGTGAAGCCTCTTATAGAAA
GTGAAAAAATAAAAGAAATTGGCAGGATGATCTCCGGTGTCGAGATTACGGATTTAACGAAGCAACATGCCAATGAATTA
ATTCAGCTAGCCAAAAGGTTGAAAATTACGTCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.764

100

0.613