Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GM240_RS01945 Genome accession   NZ_CP050509
Coordinates   417651..418601 (+) Length   316 a.a.
NCBI ID   WP_053348872.1    Uniprot ID   A0AAX0S172
Organism   Peribacillus butanolivorans strain KJ40     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 412651..423601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM240_RS01930 (GM240_01935) shc 412803..414701 (-) 1899 WP_263282007.1 squalene--hopene cyclase -
  GM240_RS01935 (GM240_01940) - 414883..416538 (-) 1656 WP_223305427.1 M14 family metallocarboxypeptidase -
  GM240_RS01940 (GM240_01945) - 416996..417442 (-) 447 WP_116821148.1 DUF1450 domain-containing protein -
  GM240_RS01945 (GM240_01950) ceuB 417651..418601 (+) 951 WP_053348872.1 ABC transporter permease Machinery gene
  GM240_RS01950 (GM240_01955) - 418594..419541 (+) 948 WP_053348652.1 iron chelate uptake ABC transporter family permease subunit -
  GM240_RS01955 (GM240_01960) - 419535..420293 (+) 759 WP_098177264.1 ABC transporter ATP-binding protein -
  GM240_RS01960 (GM240_01965) - 420516..421463 (+) 948 WP_190270636.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34918.20 Da        Isoelectric Point: 9.5025

>NTDB_id=433539 GM240_RS01945 WP_053348872.1 417651..418601(+) (ceuB) [Peribacillus butanolivorans strain KJ40]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLDLSDDKVQIMLQSRFPRMVTIVIAGVVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYISIPLVILAYFFANKFTVAGMGEEFAINLGLNYKFVVNFGLVIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRIIIYPFEIPIGLVVGVIGSAVFIYLIMRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=433539 GM240_RS01945 WP_053348872.1 417651..418601(+) (ceuB) [Peribacillus butanolivorans strain KJ40]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTTTATCATTTACCTCATTATTCATTGGAGTAAAAGATATTACGCC
ACTCGATTTATTAGATTTAAGTGATGATAAAGTGCAAATTATGCTGCAAAGCCGTTTTCCTAGAATGGTAACTATTGTAA
TTGCTGGGGTGGTTATGAGTATCAGTGGCTTAATCATGCAGCAATTGAGTAGAAATAAATTTGTATCACCAACAACTGCC
GGTACGATGGATTCTGCAAGGTTGGGTCTTCTTCTTGCTATTATCATTTTTCCATCAGCAGCACTTATTGAGAAAATGGC
ATTCGCATTCATATTCGCTTTGGCAGGCACTTTCTTGTTCATGAAAATTCTTGATCAAGTTAAATACAAGGATACGATTT
TTATTCCATTGGTTGGTTTGATGTTTGGTAATATCGTCGGATCTATATCAACTTTCTTTGCTTATAAATATGATTTGATT
CAAAGTCTCAACACATGGATGAATGGGGATTTCTCGATGATTATGTCGGGAAGATATGAACTAATATACATAAGTATCCC
TTTGGTTATTCTCGCATACTTCTTTGCTAATAAATTCACTGTGGCAGGGATGGGTGAGGAGTTTGCTATCAATCTTGGAC
TCAATTATAAATTTGTAGTCAATTTTGGATTGGTTATCGTAGCATTATCCTCTACCGTCGTCTTGTTAACGGTGGGAACA
ATTCCTTTTATAGGACTGATTGTACCTAATATTGTTTCACTTTACCTTGGTGATAATTTGAAGAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCTGTGTTCCTATTGATCTGCGATATTCTGGGGCGGATTATCATTTATCCATTTGAAATTCCGATAG
GTCTCGTAGTTGGTGTAATAGGAAGCGCCGTATTTATCTATCTGATAATGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.684

100

0.497