Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HCK03_RS17570 Genome accession   NZ_CP050508
Coordinates   3723800..3724399 (-) Length   199 a.a.
NCBI ID   WP_041144832.1    Uniprot ID   A0A485B8R9
Organism   Raoultella terrigena strain JH01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3718800..3729399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCK03_RS17555 (HCK03_17550) helD 3719010..3721064 (-) 2055 WP_167691972.1 DNA helicase IV -
  HCK03_RS17560 (HCK03_17555) - 3721187..3721633 (+) 447 WP_041144834.1 YccF domain-containing protein -
  HCK03_RS17565 (HCK03_17560) yccS 3721651..3723786 (+) 2136 WP_041144833.1 YccS family putative transporter -
  HCK03_RS17570 (HCK03_17565) sxy/tfoX 3723800..3724399 (-) 600 WP_041144832.1 TfoX/Sxy family DNA transformation protein Regulator
  HCK03_RS17575 (HCK03_17570) sulA 3724865..3725374 (+) 510 WP_041144831.1 SOS-induced cell division inhibitor SulA -
  HCK03_RS17580 (HCK03_17575) ompA 3725727..3726797 (+) 1071 WP_076945486.1 porin OmpA -
  HCK03_RS17585 (HCK03_17580) matP 3726901..3727353 (-) 453 WP_041144830.1 macrodomain Ter protein MatP -
  HCK03_RS17590 (HCK03_17585) - 3727539..3729296 (+) 1758 WP_167691973.1 Lon protease family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22659.59 Da        Isoelectric Point: 10.1929

>NTDB_id=433518 HCK03_RS17570 WP_041144832.1 3723800..3724399(-) (sxy/tfoX) [Raoultella terrigena strain JH01]
MKKISSLRFHKFQKCLSPLGKIICRPLFGGYSLAIDNTVFAMVAEGEIYLKICEQGAAYCVAHENPLLKMRKNGRPILLK
YYQINETLWCDSKMLFKLSSLSLQAAQKEKNQQRYSGRLKDLPNISFHMELLLINSGVIDQQALRHIGAQRAWLKLRESN
KAVTLNILYSLEGAITGVHAAALPTARRQELQEWALNQR

Nucleotide


Download         Length: 600 bp        

>NTDB_id=433518 HCK03_RS17570 WP_041144832.1 3723800..3724399(-) (sxy/tfoX) [Raoultella terrigena strain JH01]
ATGAAAAAAATATCATCCCTACGGTTTCATAAATTTCAGAAGTGCTTGTCGCCATTAGGAAAAATAATCTGCCGTCCTTT
GTTTGGTGGCTATAGCCTGGCAATAGACAACACCGTATTTGCGATGGTTGCAGAGGGGGAGATCTATCTTAAGATTTGTG
AGCAGGGCGCCGCATATTGCGTTGCTCATGAAAATCCGCTTTTAAAAATGCGAAAAAACGGGCGGCCAATTTTGCTTAAA
TATTATCAGATAAATGAAACTCTTTGGTGTGACAGTAAAATGCTTTTCAAACTATCGTCGCTTTCATTACAGGCGGCGCA
AAAAGAAAAGAACCAGCAGCGTTATTCCGGCAGGTTGAAAGATCTGCCAAATATTAGTTTTCATATGGAGCTACTATTAA
TTAACTCAGGGGTAATAGATCAGCAGGCGCTGCGTCATATTGGTGCACAGCGTGCGTGGCTAAAGCTGCGAGAGTCGAAT
AAGGCCGTCACGCTGAATATTCTCTATTCACTGGAAGGGGCAATTACCGGCGTTCACGCCGCTGCGCTCCCGACGGCACG
GCGTCAGGAGCTGCAGGAGTGGGCGCTTAACCAGCGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A485B8R9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

53.333

97.99

0.523