Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   SCIM_RS08150 Genome accession   NC_018073
Coordinates   1681915..1683891 (-) Length   658 a.a.
NCBI ID   WP_003076210.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1676915..1688891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS08130 (SCIM_1475) eeP 1677446..1678717 (-) 1272 WP_003076026.1 M50 family metallopeptidase Regulator
  SCIM_RS08135 (SCIM_1476) - 1678869..1679672 (-) 804 WP_003074045.1 phosphatidate cytidylyltransferase -
  SCIM_RS08140 (SCIM_1477) - 1679681..1680430 (-) 750 WP_003074042.1 isoprenyl transferase -
  SCIM_RS08145 (SCIM_1478) yajC 1680898..1681236 (-) 339 WP_003076043.1 preprotein translocase subunit YajC -
  SCIM_RS08150 (SCIM_1479) recP/tkt 1681915..1683891 (-) 1977 WP_003076210.1 transketolase Machinery gene
  SCIM_RS08155 (SCIM_1480) ulaG 1684032..1685123 (-) 1092 WP_003074034.1 L-ascorbate 6-phosphate lactonase -
  SCIM_RS08160 (SCIM_1481) - 1685285..1686955 (-) 1671 WP_003074032.1 BglG family transcription antiterminator -
  SCIM_RS08165 - 1687168..1687875 (-) 708 WP_003075831.1 L-ribulose-5-phosphate 4-epimerase -
  SCIM_RS08170 (SCIM_1482) - 1687878..1688741 (-) 864 WP_003076035.1 L-ribulose-5-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71349.49 Da        Isoelectric Point: 4.9260

>NTDB_id=43351 SCIM_RS08150 WP_003076210.1 1681915..1683891(-) (recP/tkt) [Streptococcus intermedius JTH08]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYDLFTKQMRINPEVPNWINRDRFVLSAGHGSMLLYALLHLSGFQD
VTMEELKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISMATGFAQAERFLAAKYNREGYNLFDHYTYVICGDGDLMEG
VAAEAASYAGLQKLDKLIVLYDSNDINLDGETKDSFTESVRARYDAYGWHTDLVKDGTDLEAINAAIEAAKVSGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGAEEVAATRKALTWDYEPFEIPEEVYEDYRVNVAERGKAAYDAWVKLVEAYKQAYPD
LAEEVAAVIAGQDPVEIKPEDFPVVETGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDDAHRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAIRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AIPNLNVLRPADARETQAAWYLALKSQTTPTALVLTRQNLTVEAGTDFDKVAKGAYVVYETANGFDTILLASGSEVNLAV
AAAKELEAKGEKIRVVSVPSTDIFDAQDAAYKEEILPHSVRRRVAIEMAASQSWYKYVGLDGAVIGIDKFGASAPAAKVL
KEYGFTVDHIAEVVKNLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=43351 SCIM_RS08150 WP_003076210.1 1681915..1683891(-) (recP/tkt) [Streptococcus intermedius JTH08]
ATGTCAAATTTATCTGTCAATGCCATTCGTTTTTTAGGAATTGATGCCATTGAAAAATCAAAATCTGGTCACCCAGGTGT
TGTCATGGGAGCAGCTCCGATGGCTTATGACTTGTTTACCAAGCAAATGCGCATCAATCCAGAAGTTCCAAATTGGATCA
ATCGCGATCGGTTTGTTTTATCAGCTGGTCATGGCTCTATGTTACTCTATGCCCTTCTCCATTTGTCTGGTTTTCAAGAT
GTTACAATGGAAGAACTCAAGAACTTCCGTCAATGGGGTTCTAAAACGCCTGGGCATCCCGAATTTGGACATACTGCTGG
TGTAGATGCGACAACTGGGCCACTTGGTCAAGGAATTTCTATGGCAACTGGTTTTGCACAAGCAGAACGTTTCCTAGCGG
CTAAGTATAATCGTGAAGGGTATAACCTCTTTGACCACTATACGTATGTGATCTGTGGTGATGGAGACTTGATGGAAGGT
GTAGCTGCTGAAGCAGCTTCTTATGCTGGACTCCAAAAGCTAGACAAGCTCATCGTTCTCTATGACTCCAACGATATTAA
TCTGGATGGAGAAACCAAGGATTCCTTTACAGAAAGTGTTCGGGCGCGTTATGATGCTTATGGTTGGCACACAGATTTGG
TCAAAGATGGCACAGACTTAGAAGCGATCAATGCAGCGATTGAGGCTGCAAAAGTTTCTGGCAAACCGTCCTTAATTGAA
GTGAAAACAGTGATTGGTTATGGTTCACCAAACAAACAAGGGACTAATGCCGTTCATGGAGCTCCTCTTGGTGCAGAAGA
AGTAGCCGCTACTCGTAAAGCTCTTACTTGGGATTACGAACCGTTTGAAATTCCTGAAGAAGTCTACGAAGATTATCGGG
TCAATGTTGCCGAACGTGGGAAAGCTGCTTATGATGCTTGGGTAAAACTTGTTGAAGCATACAAACAAGCCTATCCTGAC
TTAGCTGAAGAAGTAGCTGCTGTTATTGCGGGACAAGATCCAGTTGAGATCAAGCCAGAAGATTTCCCAGTAGTAGAAAC
AGGTTTCTCACAAGCTACTCGTAATTCTAGCCAAGATGCTTTAAATGCGGCAGCAAAAGTACTTCCAACATTCCTTGGTG
GCTCTGCTGATCTAGCTCATTCTAATATGACTTATATCAAAGAAGATGGCTTGCAAGATGATGCCCACCGCCTTAACCGC
AACATTCAATTTGGTGTACGTGAATTTGCTATGGGAACGATTCTGAATGGTATGGCACTTCACGGGGGACTTCGTGTTTA
TGGTGGTACATTCTTTGTGTTCTCAGATTATGTCAAAGCGGCTATTCGTTTATCAGCTCTTCAAGGCTTGCCTGTAACCT
ATGTCTTTACACATGATTCAATTGCAGTTGGTGAGGATGGTCCAACTCATGAACCAATTGAGCACTTAGCAGGTCTTCGT
GCAATTCCAAACCTCAATGTTTTGCGCCCAGCAGATGCACGTGAAACACAGGCTGCTTGGTACTTGGCGCTGAAGAGTCA
AACAACTCCAACAGCTTTGGTTCTCACACGTCAAAACTTGACAGTTGAAGCTGGAACTGACTTTGACAAGGTGGCGAAAG
GAGCTTATGTTGTATATGAAACAGCAAATGGTTTTGATACAATTCTTCTGGCATCTGGTTCTGAAGTTAATTTAGCTGTA
GCGGCTGCAAAAGAGTTGGAGGCTAAAGGAGAAAAGATTCGTGTTGTCAGCGTACCATCAACAGATATCTTTGATGCACA
AGATGCTGCCTACAAAGAAGAAATTTTACCACATTCAGTCCGTCGCCGTGTCGCGATTGAAATGGCTGCAAGTCAGTCTT
GGTACAAATATGTTGGACTTGATGGAGCTGTGATTGGTATTGACAAATTTGGCGCTTCTGCCCCAGCTGCTAAAGTGCTT
AAAGAATATGGTTTCACCGTTGATCATATCGCAGAAGTTGTGAAAAACTTGAAATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(543-650)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

78.995

99.848

0.789