Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   HCR02_RS07880 Genome accession   NZ_CP050505
Coordinates   1523855..1524604 (-) Length   249 a.a.
NCBI ID   WP_306307845.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain BJ16148     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1518855..1529604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCR02_RS07850 (HCR02_07805) - 1519482..1520710 (-) 1229 Protein_1535 multidrug effflux MFS transporter -
  HCR02_RS07860 (HCR02_07815) - 1520826..1521701 (-) 876 WP_003689397.1 EamA family transporter -
  HCR02_RS07865 (HCR02_07820) - 1521884..1522267 (+) 384 Protein_1537 pilin -
  HCR02_RS07870 (HCR02_07825) - 1522804..1523586 (+) 783 WP_190786250.1 opacity family porin -
  HCR02_RS07875 (HCR02_07830) - 1523600..1523818 (+) 219 WP_232017996.1 pilin -
  HCR02_RS07880 (HCR02_07835) pilA 1523855..1524604 (-) 750 WP_306307845.1 nitrilase-related carbon-nitrogen hydrolase Machinery gene
  HCR02_RS07885 (HCR02_07840) - 1524587..1525459 (+) 873 WP_003693577.1 prephenate dehydrogenase -
  HCR02_RS07890 (HCR02_07845) - 1525517..1526671 (-) 1155 WP_010358927.1 NnrS family protein -
  HCR02_RS07895 (HCR02_07850) - 1526716..1527084 (-) 369 WP_003689404.1 hemerythrin domain-containing protein -
  HCR02_RS07900 (HCR02_07855) - 1527258..1527701 (+) 444 WP_003689406.1 Rrf2 family transcriptional regulator -
  HCR02_RS12235 - 1527711..1527839 (+) 129 WP_010358932.1 hypothetical protein -
  HCR02_RS07905 (HCR02_07860) - 1527863..1528483 (-) 621 WP_010358934.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26574.78 Da        Isoelectric Point: 6.7235

>NTDB_id=433466 HCR02_RS07880 WP_306307845.1 1523855..1524604(-) (pilA) [Neisseria gonorrhoeae strain BJ16148]
MVQNGHLCKRFSQSAAMVAYRRNMPQGRQEKGEEMDKIRVAAVQMVSGVSPETNVAAMKRLVARAAEQGADWVLLPEYWV
LMGANDTGKLALAEPLGGGRFQTALSETAKECGVVLFGGTVPLQSPEARGIDIVLADTAGRLPTQLHLMEEIKKVKRVLQ
KAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGIDDLRPFDA
RAFVDALLD

Nucleotide


Download         Length: 750 bp        

>NTDB_id=433466 HCR02_RS07880 WP_306307845.1 1523855..1524604(-) (pilA) [Neisseria gonorrhoeae strain BJ16148]
ATGGTTCAAAATGGGCATTTGTGTAAACGGTTTTCGCAAAGTGCCGCCATGGTAGCCTATCGGCGGAATATGCCGCAAGG
TCGGCAGGAAAAAGGAGAAGAAATGGACAAAATCAGAGTTGCCGCCGTGCAGATGGTGTCGGGCGTGTCGCCGGAAACCA
ACGTCGCCGCCATGAAACGCCTGGTCGCACGGGCGGCGGAGCAGGGTGCGGATTGGGTGCTGCTGCCCGAATATTGGGTG
CTGATGGGCGCAAACGATACCGGCAAACTCGCACTTGCCGAGCCTTTGGGCGGCGGACGCTTTCAGACGGCATTGAGCGA
AACGGCGAAAGAATGCGGCGTGGTGCTGTTCGGCGGAACCGTGCCGCTGCAAAGCCCCGAAGCGCGCGGGATCGACATCG
TGCTTGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCATTTGATGGAAGAAATCAAAAAAGTGAAGCGCGTGCTGCAA
AAAGCCATTCCCGGCGCGCCGCACGAAATCATCGTCGTACTCGATGCCAATATCGGGCAAAACGCCGTCAACCAAGTCAA
AGCCTTTGACGACGCATTGGGGCTGACGGGGCTTATCGTTACCAAACTCGACGGCACGGCAAAAGGCGGCATCCTCGCCG
CGCTTGCTTCCGACCGCCCCGTCCCCGTCCGCTACATCGGCGTGGGCGAAGGCATAGACGACCTGCGCCCGTTTGACGCG
CGCGCGTTTGTGGACGCACTGCTGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(124-248)

Carbon-nitrogen hydrolase (CN_hydrolase)

(39-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

79.769

69.478

0.554