Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | HCR02_RS03925 | Genome accession | NZ_CP050505 |
| Coordinates | 766086..767831 (+) | Length | 581 a.a. |
| NCBI ID | WP_003688652.1 | Uniprot ID | A0AA44U7G6 |
| Organism | Neisseria gonorrhoeae strain BJ16148 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 730914..805960 | 766086..767831 | within | 0 |
| IS/Tn | 768518..769519 | 766086..767831 | flank | 687 |
Gene organization within MGE regions
Location: 730914..805960
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCR02_RS03750 (HCR02_03725) | - | 730914..731984 (-) | 1071 | WP_010360162.1 | integrase arm-type DNA-binding domain-containing protein | - |
| HCR02_RS03755 (HCR02_03730) | - | 732193..732972 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| HCR02_RS03760 (HCR02_03735) | - | 733264..733560 (-) | 297 | WP_003688700.1 | hypothetical protein | - |
| HCR02_RS03765 (HCR02_03740) | - | 733564..733788 (-) | 225 | WP_003704005.1 | hypothetical protein | - |
| HCR02_RS03770 (HCR02_03745) | dinB | 733872..734930 (+) | 1059 | WP_003695315.1 | DNA polymerase IV | - |
| HCR02_RS03775 (HCR02_03750) | rep | 735000..737015 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| HCR02_RS03780 (HCR02_03755) | aroD | 737035..737799 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| HCR02_RS03785 (HCR02_03760) | recA | 737999..739045 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| HCR02_RS03790 (HCR02_03765) | - | 739698..740033 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HCR02_RS03795 (HCR02_03770) | dnaX | 740114..742237 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| HCR02_RS03800 (HCR02_03775) | mutL | 742332..744296 (-) | 1965 | WP_047926984.1 | DNA mismatch repair endonuclease MutL | - |
| HCR02_RS03805 (HCR02_03780) | - | 744440..744625 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| HCR02_RS03810 (HCR02_03785) | - | 744636..745304 (+) | 669 | WP_003688686.1 | O-methyltransferase | - |
| HCR02_RS03815 (HCR02_03790) | - | 745304..746017 (+) | 714 | WP_003697104.1 | tol-pal system YbgF family protein | - |
| HCR02_RS03820 (HCR02_03795) | purE | 746065..746550 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| HCR02_RS03825 (HCR02_03800) | - | 746762..747572 (-) | 811 | Protein_756 | transposase | - |
| HCR02_RS03830 (HCR02_03805) | - | 747943..748308 (+) | 366 | Protein_757 | transposase | - |
| HCR02_RS03835 (HCR02_03810) | - | 748471..749379 (+) | 909 | WP_003688683.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| HCR02_RS03840 (HCR02_03815) | - | 749535..750191 (-) | 657 | WP_003688682.1 | response regulator transcription factor | - |
| HCR02_RS03845 (HCR02_03820) | - | 750188..751957 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| HCR02_RS03850 (HCR02_03825) | - | 752164..752778 (+) | 615 | WP_047917856.1 | molybdenum cofactor guanylyltransferase | - |
| HCR02_RS03855 (HCR02_03830) | - | 752941..753558 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| HCR02_RS03860 (HCR02_03835) | - | 753566..754429 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| HCR02_RS03865 (HCR02_03840) | - | 754442..754876 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| HCR02_RS03870 (HCR02_03845) | rpe | 755022..755705 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| HCR02_RS03875 (HCR02_03850) | ruvB | 755950..756981 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| HCR02_RS03880 (HCR02_03855) | - | 757063..757371 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| HCR02_RS03885 (HCR02_03860) | - | 757790..759022 (-) | 1233 | WP_003702731.1 | multifunctional CCA addition/repair protein | - |
| HCR02_RS03890 (HCR02_03865) | - | 759101..760729 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| HCR02_RS03895 (HCR02_03870) | - | 760879..761253 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| HCR02_RS03900 (HCR02_03875) | - | 761302..762840 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| HCR02_RS03905 (HCR02_03880) | recR | 762907..763524 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| HCR02_RS03910 (HCR02_03885) | - | 763580..763858 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| HCR02_RS03915 (HCR02_03890) | - | 764084..765331 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| HCR02_RS03920 (HCR02_03895) | lolD | 765324..766019 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| HCR02_RS03925 (HCR02_03900) | recD | 766086..767831 (+) | 1746 | WP_003688652.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| HCR02_RS03930 (HCR02_03905) | - | 767903..768549 (-) | 647 | Protein_777 | class I SAM-dependent methyltransferase | - |
| HCR02_RS03935 (HCR02_03910) | - | 768557..769519 (+) | 963 | WP_127466217.1 | transposase | - |
| HCR02_RS03940 (HCR02_03915) | - | 769652..770107 (-) | 456 | Protein_779 | methyltransferase | - |
| HCR02_RS03945 (HCR02_03920) | lon | 770359..772821 (+) | 2463 | WP_003688644.1 | endopeptidase La | - |
| HCR02_RS03950 (HCR02_03925) | - | 773003..773272 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| HCR02_RS03955 (HCR02_03930) | - | 773448..773882 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| HCR02_RS03960 (HCR02_03935) | - | 773875..775182 (-) | 1308 | WP_103195193.1 | homoserine dehydrogenase | - |
| HCR02_RS03965 (HCR02_03940) | - | 775378..775749 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| HCR02_RS03970 (HCR02_03945) | - | 775826..777748 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| HCR02_RS03975 (HCR02_03950) | - | 777711..778130 (+) | 420 | WP_229692939.1 | DUF4124 domain-containing protein | - |
| HCR02_RS03980 (HCR02_03955) | - | 778221..778733 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| HCR02_RS03985 (HCR02_03960) | - | 779163..779858 (-) | 696 | WP_033910499.1 | DUF4400 domain-containing protein | - |
| HCR02_RS03990 (HCR02_03965) | traD | 779848..781890 (-) | 2043 | WP_012503640.1 | type IV conjugative transfer system coupling protein TraD | - |
| HCR02_RS03995 (HCR02_03970) | mobH | 781887..784439 (-) | 2553 | WP_012503639.1 | MobH family relaxase | - |
| HCR02_RS04000 (HCR02_03975) | - | 784436..784855 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| HCR02_RS04005 (HCR02_03980) | - | 785366..785827 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| HCR02_RS04010 (HCR02_03985) | - | 785797..786318 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| HCR02_RS04015 (HCR02_03990) | traA | 786374..786670 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| HCR02_RS04020 (HCR02_03995) | traL | 786692..786973 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| HCR02_RS04025 (HCR02_04000) | - | 786970..787635 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| HCR02_RS04030 (HCR02_04005) | - | 787637..788371 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| HCR02_RS04035 (HCR02_04010) | - | 788373..789686 (+) | 1314 | WP_003697090.1 | TrbI/VirB10 family protein | - |
| HCR02_RS04040 (HCR02_04015) | - | 789696..790415 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| HCR02_RS04045 (HCR02_04020) | - | 790415..790993 (+) | 579 | WP_229690052.1 | TraV family lipoprotein | - |
| HCR02_RS04050 (HCR02_04025) | traC | 791003..793579 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| HCR02_RS04055 (HCR02_04030) | - | 793607..794155 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| HCR02_RS04060 (HCR02_04035) | - | 794155..794700 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| HCR02_RS04065 (HCR02_04040) | - | 794709..795365 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| HCR02_RS04070 (HCR02_04045) | - | 795362..796480 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| HCR02_RS11920 | - | 796507..796680 (-) | 174 | WP_228369789.1 | hypothetical protein | - |
| HCR02_RS11925 | trbC | 796765..797247 (+) | 483 | WP_228369788.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| HCR02_RS04080 (HCR02_04055) | - | 797244..798488 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| HCR02_RS04085 (HCR02_04060) | traN | 798527..800068 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| HCR02_RS04090 (HCR02_04065) | - | 800055..800480 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| HCR02_RS04095 (HCR02_04070) | - | 800492..801268 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| HCR02_RS04100 (HCR02_04075) | - | 801440..802951 (+) | 1512 | WP_041421275.1 | conjugal transfer protein TraH | - |
| HCR02_RS04105 (HCR02_04080) | - | 802958..805960 (+) | 3003 | WP_012503630.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63039.83 Da Isoelectric Point: 6.0083
>NTDB_id=433459 HCR02_RS03925 WP_003688652.1 766086..767831(+) (recD) [Neisseria gonorrhoeae strain BJ16148]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALGSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=433459 HCR02_RS03925 WP_003688652.1 766086..767831(+) (recD) [Neisseria gonorrhoeae strain BJ16148]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCGGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.828 |
100 |
0.998 |