Detailed information    

insolico Bioinformatically predicted

Overview


Name   spo0A   Type   Regulator
Locus tag   BCF_RS20375 Genome accession   NC_016779
Coordinates   3930481..3931275 (-) Length   264 a.a.
NCBI ID   WP_003161566.1    Uniprot ID   P52928
Organism   Bacillus cereus F837/76     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context


Location: 3925481..3936275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCF_RS20355 (bcf_20715) - 3927282..3927515 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  BCF_RS20360 (bcf_20720) - 3927564..3928292 (-) 729 WP_000172561.1 glycerophosphodiester phosphodiesterase -
  BCF_RS20365 (bcf_20725) - 3928343..3928489 (+) 147 WP_001247671.1 YycC family protein -
  BCF_RS20370 (bcf_20730) - 3928657..3930183 (-) 1527 WP_000218389.1 glycosyltransferase family 39 protein -
  BCF_RS20375 (bcf_20735) spo0A 3930481..3931275 (-) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  BCF_RS20380 (bcf_20740) spoIVB 3931563..3932861 (-) 1299 WP_002054681.1 SpoIVB peptidase -
  BCF_RS20385 (bcf_20745) recN 3932980..3934719 (-) 1740 WP_000947754.1 DNA repair protein RecN Machinery gene
  BCF_RS20390 (bcf_20750) argR 3934987..3935436 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence


Protein


Download         Length: 264 a.a.        Molecular weight: 29440.17 Da        Isoelectric Point: 7.4718

>NTDB_id=43341 BCF_RS20375 WP_003161566.1 3930481..3931275(-) (spo0A) [Bacillus cereus F837/76]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=43341 BCF_RS20375 WP_003161566.1 3930481..3931275(-) (spo0A) [Bacillus cereus F837/76]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTCG
TATTGGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAAAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCGAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAATTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGACATCGCGAAGAAATATAATACAACAGCAAGCCGCGTTGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATTGCAATGGTTGCGGATAAGTTGAGACTTGAACATAAGGCTAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P52928

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818


Multiple sequence alignment