Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SCIM_RS07290 Genome accession   NC_018073
Coordinates   1494433..1494891 (-) Length   152 a.a.
NCBI ID   WP_003074423.1    Uniprot ID   A0A380L5S7
Organism   Streptococcus intermedius JTH08     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489433..1499891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS07275 (SCIM_1309) - 1490426..1490839 (-) 414 WP_003075980.1 cupin domain-containing protein -
  SCIM_RS07280 (SCIM_1310) rcrQ 1490924..1492684 (-) 1761 WP_003076199.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS07285 (SCIM_1311) rcrP 1492674..1494440 (-) 1767 WP_003075874.1 ABC transporter ATP-binding protein Regulator
  SCIM_RS07290 (SCIM_1312) rcrR 1494433..1494891 (-) 459 WP_003074423.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SCIM_RS07295 (SCIM_1313) - 1495063..1496250 (-) 1188 WP_003075855.1 NADH-dependent flavin oxidoreductase -
  SCIM_RS07300 (SCIM_1314) - 1496517..1496927 (-) 411 WP_003075948.1 peptide deformylase -
  SCIM_RS07305 (SCIM_1315) scrK 1496993..1497892 (-) 900 WP_003076084.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17709.68 Da        Isoelectric Point: 9.0561

>NTDB_id=43340 SCIM_RS07290 WP_003074423.1 1494433..1494891(-) (rcrR) [Streptococcus intermedius JTH08]
MEKPLLEFKRFGRKTHLMIQKIAKERGIEFMAGPQGQVLHFVNHREDCGKMTFIKDIEQELGITKSVASNLMKRMVKNGL
IYLEVSEADKRAKIIRLTSESKERMNKIRDFFDEMDRCLLTGISEEDLVTFFQVMGKFYQNIEKLEKGEANG

Nucleotide


Download         Length: 459 bp        

>NTDB_id=43340 SCIM_RS07290 WP_003074423.1 1494433..1494891(-) (rcrR) [Streptococcus intermedius JTH08]
ATGGAAAAACCATTATTGGAATTCAAGCGATTTGGACGAAAGACGCATCTGATGATTCAAAAAATTGCTAAAGAGCGAGG
GATTGAATTTATGGCGGGTCCACAAGGGCAAGTATTGCATTTTGTGAATCACCGAGAAGATTGTGGCAAGATGACCTTTA
TTAAAGATATTGAGCAGGAGTTGGGAATTACCAAGTCAGTTGCTAGTAATTTAATGAAGCGAATGGTTAAAAATGGCTTG
ATTTATCTGGAAGTGAGTGAAGCAGATAAACGCGCTAAGATTATTCGTTTGACATCAGAATCAAAAGAGCGCATGAATAA
AATTCGGGATTTCTTTGATGAGATGGATCGCTGCTTATTGACTGGCATTTCAGAAGAAGATTTGGTGACTTTTTTTCAGG
TAATGGGAAAATTTTACCAGAATATTGAAAAATTAGAAAAAGGAGAAGCGAATGGTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380L5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.151

96.053

0.414

Multiple sequence alignment