Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HCR07_RS08435 Genome accession   NZ_CP050498
Coordinates   1507566..1508195 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain RM13322     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502566..1513195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCR07_RS08420 (HCR07_08435) helD 1502808..1504862 (-) 2055 WP_000420533.1 DNA helicase IV -
  HCR07_RS08425 (HCR07_08440) yccF 1504985..1505431 (+) 447 WP_001261231.1 YccF domain-containing protein -
  HCR07_RS08430 (HCR07_08445) yccS 1505441..1507603 (+) 2163 WP_000875044.1 YccS family putative transporter -
  HCR07_RS08435 (HCR07_08450) sxy/tfoX 1507566..1508195 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HCR07_RS08440 (HCR07_08455) sulA 1508414..1508923 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HCR07_RS08445 (HCR07_08460) ompA 1509280..1510320 (+) 1041 WP_000750416.1 porin OmpA -
  HCR07_RS08450 (HCR07_08465) matP 1510396..1510848 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HCR07_RS08455 (HCR07_08470) ycbZ 1511034..1512794 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=433379 HCR07_RS08435 WP_000839153.1 1507566..1508195(-) (sxy/tfoX) [Escherichia coli strain RM13322]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=433379 HCR07_RS08435 WP_000839153.1 1507566..1508195(-) (sxy/tfoX) [Escherichia coli strain RM13322]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1