Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HCC74_RS04760 Genome accession   NZ_CP050493
Coordinates   1067372..1069123 (+) Length   583 a.a.
NCBI ID   WP_057909626.1    Uniprot ID   A0A0R1Z2N5
Organism   Lentilactobacillus parabuchneri strain NSMJ16     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1054660..1069123 1067372..1069123 within 0


Gene organization within MGE regions


Location: 1054660..1069123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCC74_RS04715 (HCC74_04725) - 1055396..1058179 (-) 2784 WP_057909636.1 DEAD/DEAH box helicase -
  HCC74_RS04720 (HCC74_04730) - 1058520..1058942 (+) 423 WP_193130439.1 hypothetical protein -
  HCC74_RS04725 (HCC74_04735) - 1059463..1059975 (+) 513 WP_057909633.1 helix-turn-helix domain-containing protein -
  HCC74_RS04730 (HCC74_04740) - 1060403..1061491 (+) 1089 WP_057909632.1 ABC transporter ATP-binding protein -
  HCC74_RS04735 (HCC74_04745) - 1061484..1062446 (+) 963 WP_057909631.1 carbohydrate ABC transporter permease -
  HCC74_RS04740 (HCC74_04750) - 1062446..1063276 (+) 831 WP_057909630.1 carbohydrate ABC transporter permease -
  HCC74_RS04745 (HCC74_04755) - 1063273..1064637 (+) 1365 WP_057909629.1 ABC transporter substrate-binding protein -
  HCC74_RS04750 (HCC74_04760) - 1064713..1065408 (+) 696 WP_057909628.1 glycerophosphodiester phosphodiesterase family protein -
  HCC74_RS04755 (HCC74_04765) rcrP 1065609..1067372 (+) 1764 WP_057909627.1 ABC transporter ATP-binding protein Regulator
  HCC74_RS04760 (HCC74_04770) rcrQ 1067372..1069123 (+) 1752 WP_057909626.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64686.31 Da        Isoelectric Point: 6.6724

>NTDB_id=433358 HCC74_RS04760 WP_057909626.1 1067372..1069123(+) (rcrQ) [Lentilactobacillus parabuchneri strain NSMJ16]
MTKQTNLIPGIKKYGRPYIPQVIIAVFLAAFGNIATIVGPNQLSKITNLISKGLRGSIDVSQVMRIVVILGIIYGVGALM
SYGQGFLMANVSQNFTRDLRTKISQKINRLPISYYDKHDEGDTLSRVTNDLDTFGQALNQSLGTLISSIVLIVGTILMMT
VTNWILSLTAIVSAFIGIVLTVVLLQHSQKYFNQQQNNLADVSGYVEEVYSGHQVVKTYNGTKNAKKEFTDRNQKLASSV
WKSQFISGIMQPLMTFIGNLSYVSVSVIGALLVLNNTISIGVVVAFMVYVRIFTQPLSQVTQAFSSLQSAKAALHRVFEF
LEEPDDQADQDADTELKDVKGRIDFEHVSFGYNHNETIIKDFNAHIEPGEKVAIVGPTGSGKTTLISLLMGFYQIDEGSI
KIDNKNINTITKQSIRDQFDMVLQDAWLFEDTIMNNLKYNDPNIDDDQVIEAAKAVGIDHFIRTLPKGYDTVLNDSVTLS
VGQKQLMTIARALVRNRPMLILDEATSSVDTRTEEQLQKAMDILTKGRTSLVIAHRLSTIKNADKIIVLKDGKILETGNH
QELMNENGFYASLYNSQFESLTA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=433358 HCC74_RS04760 WP_057909626.1 1067372..1069123(+) (rcrQ) [Lentilactobacillus parabuchneri strain NSMJ16]
ATGACAAAACAAACGAATTTAATTCCCGGTATCAAAAAATATGGTAGACCTTATATTCCTCAAGTAATTATTGCTGTTTT
CCTTGCGGCATTTGGCAATATTGCGACAATTGTGGGTCCTAATCAACTAAGTAAAATTACGAACTTAATTTCCAAGGGGC
TTCGGGGGAGCATTGATGTCAGCCAGGTTATGAGAATTGTGGTAATCTTAGGGATCATCTATGGCGTCGGCGCACTGATG
TCTTACGGACAAGGGTTTTTGATGGCAAATGTTTCGCAGAATTTTACCCGAGATTTGAGAACTAAGATTAGTCAGAAGAT
TAATCGTTTACCGATTTCCTATTATGACAAGCACGATGAGGGTGACACCTTAAGTCGGGTTACCAATGACTTGGATACTT
TTGGTCAGGCCCTCAACCAAAGCTTAGGAACACTCATATCATCTATTGTGTTGATTGTTGGAACCATTCTCATGATGACG
GTCACTAACTGGATTCTGAGTCTCACGGCAATTGTGTCCGCCTTTATCGGAATTGTTCTAACCGTTGTTCTTCTTCAGCA
CTCTCAAAAGTATTTTAACCAGCAACAGAACAATCTCGCTGACGTATCGGGCTATGTTGAAGAAGTTTATTCCGGCCATC
AGGTGGTCAAAACTTATAATGGCACTAAAAATGCGAAGAAAGAATTTACAGACCGCAACCAGAAATTGGCAAGCAGTGTT
TGGAAATCTCAATTCATTTCCGGAATTATGCAGCCATTGATGACATTTATCGGGAACTTAAGTTACGTTTCCGTGAGTGT
AATTGGCGCTTTGCTGGTGTTAAACAATACAATTTCAATCGGCGTAGTTGTCGCCTTCATGGTATATGTTAGAATTTTCA
CACAACCACTTTCTCAAGTCACTCAAGCATTTTCCAGCCTCCAGTCAGCTAAAGCTGCATTGCACCGAGTCTTTGAGTTT
CTCGAAGAACCAGATGATCAAGCTGACCAGGATGCAGACACTGAATTAAAGGATGTCAAAGGCCGGATTGATTTCGAACA
CGTTTCTTTTGGTTATAATCACAATGAAACAATTATTAAGGACTTTAATGCCCATATCGAACCTGGCGAAAAAGTAGCCA
TTGTTGGCCCAACAGGTTCAGGAAAGACGACGTTAATTAGTTTATTAATGGGCTTTTATCAAATTGACGAAGGCTCGATT
AAGATTGATAATAAAAACATTAACACCATCACGAAGCAAAGCATCCGTGATCAGTTTGATATGGTTCTCCAGGATGCTTG
GCTCTTTGAAGATACCATCATGAACAATTTGAAATATAATGATCCAAACATTGATGATGATCAAGTAATTGAAGCGGCCA
AAGCGGTTGGTATTGATCATTTTATCCGAACGTTGCCAAAAGGGTACGATACCGTTCTTAATGATTCAGTAACGCTATCT
GTTGGCCAAAAACAGTTAATGACAATTGCAAGAGCGCTTGTTCGAAATCGGCCAATGTTGATTTTGGATGAAGCTACTAG
TTCAGTTGATACTCGAACTGAAGAACAGCTTCAAAAAGCCATGGACATTTTGACCAAAGGACGCACATCGCTGGTAATTG
CCCATCGATTGTCAACAATCAAAAATGCCGACAAAATTATTGTGCTTAAAGATGGTAAAATCTTAGAGACAGGAAATCAT
CAAGAATTGATGAATGAAAATGGCTTCTATGCTAGTCTGTACAACAGTCAATTTGAAAGTCTAACTGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(360-507)

ABC transporter transmembrane region (ABC_membrane)

(22-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1Z2N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.34

98.799

0.537