Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EGM183_RS03865 Genome accession   NZ_CP050491
Coordinates   772536..774209 (+) Length   557 a.a.
NCBI ID   WP_192177205.1    Uniprot ID   -
Organism   Enterococcus faecalis strain EGM183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 767536..779209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM183_RS03835 (EGM183_03835) - 767787..768632 (+) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  EGM183_RS03840 (EGM183_03840) xseA 768642..769988 (+) 1347 WP_002395762.1 exodeoxyribonuclease VII large subunit -
  EGM183_RS03845 (EGM183_03845) - 769990..770220 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  EGM183_RS03850 (EGM183_03850) - 770220..771101 (+) 882 WP_002369880.1 polyprenyl synthetase family protein -
  EGM183_RS03855 (EGM183_03855) - 771115..771930 (+) 816 WP_192177204.1 TlyA family RNA methyltransferase -
  EGM183_RS03860 (EGM183_03860) - 772069..772518 (+) 450 WP_002358881.1 arginine repressor -
  EGM183_RS03865 (EGM183_03865) recN 772536..774209 (+) 1674 WP_192177205.1 DNA repair protein RecN Machinery gene
  EGM183_RS03870 (EGM183_03870) - 774300..774410 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  EGM183_RS03875 (EGM183_03875) - 774478..775443 (-) 966 WP_002387038.1 magnesium transporter CorA family protein -
  EGM183_RS03880 (EGM183_03880) - 775688..776080 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  EGM183_RS03885 (EGM183_03885) mraZ 776314..776799 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  EGM183_RS03890 (EGM183_03890) rsmH 776814..777770 (+) 957 WP_010710705.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  EGM183_RS03895 (EGM183_03895) ftsL 777787..778194 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62717.14 Da        Isoelectric Point: 4.5772

>NTDB_id=433323 EGM183_RS03865 WP_192177205.1 772536..774209(+) (recN) [Enterococcus faecalis strain EGM183]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLTVKE
KYTRVYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=433323 EGM183_RS03865 WP_192177205.1 772536..774209(+) (recN) [Enterococcus faecalis strain EGM183]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACAGGAGAAACGGGTGCAGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATCCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAACAGTCAAAGAA
AAATATACACGGGTATATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGTGAAGAAGAACAATTGC
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATTGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTAATTGATGGCTTAG
AACTAGACGAAGGTCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGTGATTCG
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCAGCTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTGACCGAATTAAAAGAACTGTATTTGGAGCGAACGGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCCCAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGGCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.501