Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   EGM182_RS11045 Genome accession   NZ_CP050490
Coordinates   2149435..2151252 (-) Length   605 a.a.
NCBI ID   WP_118215471.1    Uniprot ID   -
Organism   Enterococcus casseliflavus strain EGM182     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2144435..2156252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGM182_RS11020 (EGM182_11135) - 2145393..2146292 (-) 900 WP_074932946.1 RluA family pseudouridine synthase -
  EGM182_RS11025 (EGM182_11140) - 2146297..2147094 (-) 798 WP_026008090.1 NAD kinase -
  EGM182_RS11030 (EGM182_11145) - 2147100..2147768 (-) 669 WP_005229708.1 GTP pyrophosphokinase family protein -
  EGM182_RS11035 (EGM182_11150) - 2147964..2148539 (+) 576 WP_074932947.1 CYTH domain-containing protein -
  EGM182_RS11040 (EGM182_11155) - 2148648..2149304 (+) 657 WP_118215472.1 DsbA family protein -
  EGM182_RS11045 (EGM182_11160) pepF 2149435..2151252 (-) 1818 WP_118215471.1 oligoendopeptidase F Regulator
  EGM182_RS11050 (EGM182_11165) - 2151321..2152310 (-) 990 WP_115232513.1 competence protein CoiA -
  EGM182_RS11055 (EGM182_11170) - 2152411..2153061 (-) 651 WP_005229698.1 adaptor protein MecA -
  EGM182_RS11060 (EGM182_11175) spxA 2153214..2153612 (-) 399 WP_003127030.1 transcriptional regulator SpxA -
  EGM182_RS11065 (EGM182_11180) - 2154322..2156058 (-) 1737 WP_118215469.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69095.71 Da        Isoelectric Point: 4.6993

>NTDB_id=433294 EGM182_RS11045 WP_118215471.1 2149435..2151252(-) (pepF) [Enterococcus casseliflavus strain EGM182]
MSETKQLPARESIPVEKTWDLTKIYADDVAFDIEFQEIQAQVKEASRYQGTLADGPQAFLSALEFVLALSRRLEKLYVYS
HLKNDQDTANTTYQGLYAKASSLVAQVSEAVAWFDPELLTMSDETIWGYFDQEPKLAVYRHMIEKTINERPHVLPAEQEA
LLAGAGEIFGAPGNIFSVLNNADLDFPVVEDENGEKVQLSHGVYGELMESTDRSVREAAFKGLYGVYEQFRNTFAQTLST
NIKAHNFKAKARKFDSARQAALSANHIPESVYDTLVDVVNQHLPLLHRYMALRKRLLAVDTLHMYDVYTPILGEAPIRYT
YEEAVEKAKEALKPLGEEYLAVVEEAFSNRWIDVVENKGKRSGAYSSGAYDTLPYILMNWNDRLDQLFTLVHEMGHSVHS
YFTRNNQPYAYGDYSIFLAEIASTTNENILTEYMLQTETDPRVKAYVLNHFLDGFKGTIFRQTQFAEFEHFMHVEDAKGT
PLTSEFLSENYAELNAKYYGPSVEKDPEIRLEWSRIPHFYYNYYVYQYSTGFSAASALAKKILAGEPDALTNYLNYLKAG
RSDYPIEVMKKAGVDMTKADYIEDAMKVFEQRLNELEELVKEIEA

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=433294 EGM182_RS11045 WP_118215471.1 2149435..2151252(-) (pepF) [Enterococcus casseliflavus strain EGM182]
ATGTCAGAAACAAAACAATTACCAGCACGTGAATCGATTCCAGTCGAAAAAACGTGGGACTTAACGAAAATCTATGCCGA
TGATGTGGCTTTTGACATAGAATTTCAAGAAATCCAAGCACAGGTCAAAGAAGCCAGCCGTTACCAAGGCACTTTAGCCG
ATGGGCCGCAAGCCTTCTTATCCGCATTAGAATTTGTTTTAGCGCTTTCTCGTCGTTTAGAGAAACTGTATGTCTACAGC
CATTTAAAAAACGACCAAGATACCGCTAATACGACTTATCAAGGCTTATATGCGAAAGCCAGCAGTTTAGTTGCGCAAGT
AAGTGAAGCCGTTGCTTGGTTTGATCCTGAGCTATTGACAATGTCTGATGAAACGATTTGGGGCTATTTCGATCAAGAGC
CGAAACTAGCTGTTTATCGTCATATGATCGAAAAAACCATCAACGAGCGTCCACATGTCTTGCCAGCGGAGCAAGAAGCG
TTGTTAGCTGGTGCTGGCGAAATTTTTGGGGCACCTGGCAACATTTTTTCTGTTTTAAACAATGCTGATTTGGATTTTCC
AGTAGTTGAAGACGAAAACGGGGAAAAAGTACAGTTATCTCATGGTGTATACGGTGAGTTGATGGAAAGCACGGATCGGT
CTGTCCGTGAAGCAGCCTTTAAAGGTCTTTATGGTGTCTATGAGCAATTCCGCAATACCTTTGCCCAAACATTAAGCACC
AATATCAAAGCCCATAACTTTAAAGCAAAAGCCCGCAAATTTGATTCGGCACGGCAAGCCGCTTTGAGTGCCAACCATAT
TCCTGAAAGTGTCTACGATACATTAGTGGATGTCGTCAATCAGCACCTGCCATTGTTGCATCGTTATATGGCATTAAGAA
AACGCCTGTTGGCTGTCGATACGTTGCATATGTATGATGTTTATACGCCGATTTTAGGGGAAGCACCCATTCGATATACC
TACGAAGAAGCGGTCGAAAAAGCGAAAGAAGCGTTAAAACCATTAGGTGAAGAATACCTTGCGGTGGTTGAAGAAGCCTT
CAGCAATCGGTGGATCGATGTCGTTGAAAACAAAGGCAAACGCAGTGGCGCGTATTCTTCTGGTGCCTATGATACGCTGC
CATATATCCTGATGAACTGGAATGATCGATTGGATCAACTCTTTACTCTTGTTCATGAAATGGGACACAGTGTGCATAGT
TACTTTACACGTAATAACCAGCCTTATGCTTATGGCGATTATTCGATTTTCTTAGCAGAAATCGCTTCGACGACGAACGA
AAATATATTAACGGAATACATGCTTCAGACTGAGACTGATCCGCGGGTCAAAGCTTATGTCTTGAATCATTTTCTCGATG
GCTTCAAAGGCACGATTTTCCGTCAAACGCAATTTGCCGAGTTTGAACACTTCATGCACGTGGAAGATGCGAAAGGAACG
CCGTTGACCAGTGAGTTCTTAAGCGAGAACTATGCCGAGTTAAATGCAAAATACTACGGACCTTCTGTTGAAAAAGATCC
TGAGATTCGTCTTGAGTGGTCACGCATTCCGCATTTCTATTACAATTACTATGTTTACCAGTATTCAACCGGATTTTCGG
CAGCTTCTGCTTTGGCGAAGAAAATCTTAGCAGGTGAACCAGATGCCTTAACCAACTATTTGAACTATTTGAAAGCTGGA
CGCAGTGATTATCCAATCGAAGTCATGAAAAAAGCGGGCGTCGATATGACAAAAGCAGATTATATTGAAGACGCGATGAA
AGTATTTGAGCAACGCTTGAATGAATTGGAAGAACTTGTCAAAGAAATTGAAGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

56.155

98.017

0.55