Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SCIM_RS06200 Genome accession   NC_018073
Coordinates   1283159..1286431 (-) Length   1090 a.a.
NCBI ID   WP_003076275.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1278159..1291431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS06195 (SCIM_1118) rexA 1279482..1283162 (-) 3681 WP_003076813.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SCIM_RS06200 (SCIM_1119) rexB 1283159..1286431 (-) 3273 WP_003076275.1 ATP-dependent nuclease subunit B Machinery gene
  SCIM_RS06205 (SCIM_1120) - 1286553..1287767 (-) 1215 WP_003076401.1 ABC transporter permease -
  SCIM_RS06210 (SCIM_1121) - 1287764..1288657 (-) 894 WP_003072123.1 ABC transporter ATP-binding protein -
  SCIM_RS06215 (SCIM_1122) - 1288862..1289155 (-) 294 WP_003072122.1 hypothetical protein -
  SCIM_RS06220 - 1289133..1289360 (-) 228 WP_003076583.1 hypothetical protein -
  SCIM_RS06225 (SCIM_1123) - 1289586..1289909 (-) 324 WP_003076631.1 hypothetical protein -
  SCIM_RS06230 - 1290189..1290401 (-) 213 WP_003076737.1 YdbC family protein -
  SCIM_RS06235 (SCIM_1124) - 1290488..1290829 (+) 342 WP_037589458.1 hypothetical protein -

Sequence

Protein


Download         Length: 1090 a.a.        Molecular weight: 125452.42 Da        Isoelectric Point: 5.1012

>NTDB_id=43328 SCIM_RS06200 WP_003076275.1 1283159..1286431(-) (rexB) [Streptococcus intermedius JTH08]
MKLLYTDIRNPLTTILVKEAERLAQEGNRVFYIAPNSLSFEKERVVLSQLTHQASFAITVTRFTQMARYFVLNDIQQGSP
LDDIGLGMLFYKVLSEMDEKDLRVYGGIRTDAQFIQQLVELYHELQSAQMTFTDLEHLEEDEKKADFLKILQAVTQQINQ
SEFSSESNIMTFANHIMTGDVDKELQDLVLVIDGFTRFSAEEAYLVELLHSKGVEIVIGVYASEKAYRTSFREGNLYQAS
VDFLRYLADKYEVKPEHRLATPLDDAFGNISKLLESRYDFSDVDLELTEQDRSHVQIWSTVNQKEELEYVAKSIRQLVHD
GVRYKDIRVLLGDVEAYHLQLKTIFDQYQIPFYLGRSEAMAHHPLVQFIEALVRLKHYNFRTEDLLNLLKTGLYGHLNQE
ELDLFEQYICFADIKGMGKFSKEFTHNQHQKFDLIRINHLRKEIVIPLLDFLKSRSQTAMGLLQNFHQFLTTISFSQNFA
GLVDFTNPQDQERQEEVWKAFCHVLEQFASVFSASKIKLDDFLTLVQSGMLLSNYRTVPATVDVVTVQSYDLIEPLSSPF
VYAIGLTQDYFPKIVQNKSLLSDEDRLLLNEATGEYSELVIATQENLKKNRFVALSLLNAATDRLVLSTPQIVNEIENNI
SSYLLELHEQPIALPIEVKRPQATSDDIGTYRGLLARIIELNQGEIDKERSLSDKDQTFWAVAVRVLRKRLENEGVSIPN
VTSSLETETLSDQTLQVLYPSHQVFLLSTSALTEFYRNQYAYFLKYVLALQDEMTIHPDARSHGNFLHRVFEKVMQDSSS
EQFDYRLEKAIQETSQEAEFKAIYTENAVALFAHEVLLDTAHATGLVLEKNDLVDTIQEEAVFGQEDVNFLSLSDGRKLQ
IRGKVDRIDRLRSNNSLGIVDYKSSDTNFDFQKFFNGLNSQLPTYLAALKQEKWVDDGTQFFGAMYLQMGNPLVPLAKTK
SYDDTVKEAMKILEYKGLFLSDQAHQLNNLYNKKKVNLLSQEELETLLAYNALLYRRAAEQILAGHFKINPYTENGKSIA
PFVEQYKSITGFEANLHLSRARHLVKLDKHSAGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3273 bp        

>NTDB_id=43328 SCIM_RS06200 WP_003076275.1 1283159..1286431(-) (rexB) [Streptococcus intermedius JTH08]
ATGAAATTACTTTATACAGATATTCGCAATCCCTTAACAACGATTTTGGTGAAAGAAGCAGAGCGTTTGGCACAGGAAGG
TAACCGCGTGTTTTATATTGCTCCTAACTCTCTTTCATTTGAAAAGGAGAGAGTAGTTTTAAGCCAGCTCACTCATCAAG
CGTCCTTTGCTATTACAGTGACGCGGTTTACCCAGATGGCACGCTATTTTGTCCTCAATGATATACAGCAAGGTAGCCCA
TTAGATGATATTGGTCTGGGAATGTTATTTTACAAAGTCTTGTCAGAAATGGATGAGAAGGACTTGCGAGTGTATGGCGG
TATTCGCACGGATGCACAATTTATTCAGCAGTTGGTTGAACTTTATCATGAGTTGCAGAGTGCTCAGATGACGTTCACGG
ATTTGGAACATCTGGAAGAAGATGAGAAGAAAGCAGATTTCCTCAAGATTTTGCAGGCTGTTACACAGCAGATCAATCAG
AGTGAGTTTAGTTCTGAATCAAATATTATGACCTTTGCCAATCATATAATGACAGGTGATGTAGATAAGGAATTGCAAGA
TTTAGTCTTGGTGATTGATGGCTTTACGCGTTTTTCTGCTGAGGAAGCCTACTTGGTTGAGCTACTGCATAGCAAGGGAG
TGGAAATTGTTATTGGTGTTTATGCAAGCGAAAAAGCATACCGTACAAGTTTTCGAGAGGGAAATCTCTATCAAGCTAGT
GTAGATTTCTTACGCTATTTGGCAGATAAATATGAAGTGAAGCCTGAGCATAGACTAGCAACACCATTAGATGATGCATT
TGGAAATATTTCAAAACTGTTAGAAAGTCGGTATGATTTCTCAGATGTTGACCTAGAGTTAACGGAGCAGGATCGCTCGC
ATGTGCAGATTTGGTCAACAGTCAATCAAAAGGAAGAATTAGAATATGTAGCAAAAAGCATTCGTCAGTTAGTTCATGAT
GGAGTTCGTTATAAGGATATTCGCGTTCTTTTGGGAGATGTGGAAGCGTATCATTTACAGTTAAAGACGATTTTTGATCA
GTATCAAATCCCTTTTTATCTGGGACGAAGTGAGGCTATGGCCCATCACCCTTTGGTGCAATTTATTGAAGCTTTAGTGC
GCCTAAAACACTACAATTTTCGAACGGAAGATTTGCTCAATCTCTTAAAAACAGGTCTCTATGGTCATTTAAACCAAGAA
GAGTTAGACTTGTTTGAGCAATATATCTGCTTTGCAGATATAAAAGGAATGGGTAAGTTTTCTAAGGAATTTACTCACAA
TCAACATCAAAAATTTGATCTCATTCGCATCAATCACTTAAGAAAAGAAATAGTCATTCCTCTTTTGGATTTTTTAAAAT
CTCGTAGTCAAACAGCAATGGGGTTACTTCAAAACTTTCATCAATTTTTAACAACAATTTCTTTTTCTCAGAATTTTGCT
GGTTTAGTAGATTTTACGAATCCGCAAGATCAAGAACGGCAAGAGGAAGTTTGGAAAGCTTTTTGTCATGTTTTGGAACA
GTTTGCCAGTGTCTTTTCAGCCAGCAAGATTAAGCTAGATGATTTTTTGACCTTGGTGCAGTCGGGAATGCTGTTATCTA
ATTATCGGACTGTTCCAGCAACAGTAGATGTCGTAACTGTTCAGTCTTATGATTTAATTGAGCCTTTGTCGAGTCCTTTT
GTCTATGCTATTGGTTTGACCCAAGATTATTTTCCAAAAATTGTCCAAAATAAGAGTCTTTTATCAGATGAAGATCGTTT
ATTGTTAAATGAAGCGACAGGTGAGTACTCAGAATTGGTGATTGCTACTCAGGAAAATCTTAAGAAAAATCGTTTTGTCG
CCTTGTCACTTCTGAATGCGGCAACAGACAGATTAGTTCTCTCTACTCCTCAGATTGTCAATGAAATAGAAAACAATATT
TCTTCCTATTTACTAGAACTACATGAACAACCAATTGCTTTGCCAATTGAAGTGAAGCGTCCACAGGCAACGAGTGATGA
TATTGGTACTTACCGCGGTTTATTGGCAAGGATTATTGAATTAAATCAAGGAGAGATTGACAAAGAGCGTTCTTTGTCTG
ATAAAGACCAGACTTTTTGGGCAGTTGCCGTACGAGTTTTGCGCAAAAGATTAGAAAATGAAGGTGTTTCGATTCCTAAT
GTAACATCAAGTCTTGAAACAGAGACTTTGTCAGATCAGACCTTACAGGTTCTTTATCCGTCTCATCAAGTATTTTTACT
ATCAACTTCAGCCTTGACAGAATTCTATCGTAATCAGTATGCTTATTTTTTGAAGTATGTCCTAGCTCTACAAGATGAAA
TGACGATCCATCCAGATGCGCGCAGTCATGGAAATTTTCTGCATCGTGTGTTTGAAAAAGTCATGCAAGATTCATCAAGT
GAGCAGTTTGATTATCGGCTAGAAAAAGCTATTCAAGAAACGAGCCAGGAAGCGGAATTTAAAGCGATTTATACTGAAAA
TGCAGTAGCTTTATTTGCGCATGAAGTGTTGCTTGATACGGCGCATGCAACAGGGCTCGTTTTAGAAAAAAATGATTTGG
TAGATACTATTCAAGAAGAAGCGGTTTTTGGACAAGAAGATGTGAACTTTTTAAGCTTATCAGATGGACGTAAGCTTCAA
ATTCGCGGGAAAGTTGACCGAATTGACCGATTGAGGAGTAATAACAGTTTAGGAATTGTAGATTATAAATCAAGTGATAC
GAATTTTGATTTTCAAAAATTTTTTAATGGCTTAAATTCTCAATTGCCAACCTATCTAGCGGCATTGAAGCAAGAAAAGT
GGGTAGATGATGGTACGCAGTTTTTTGGAGCTATGTATTTACAGATGGGTAACCCACTTGTGCCTTTAGCTAAAACGAAG
TCGTACGATGATACGGTCAAAGAAGCGATGAAAATTCTGGAATATAAGGGCTTGTTTTTATCTGATCAAGCTCATCAGCT
CAATAACTTGTATAATAAAAAGAAAGTCAATTTGTTAAGTCAAGAAGAACTAGAAACTTTGTTAGCTTATAATGCACTTT
TGTACCGTCGTGCTGCCGAGCAGATATTGGCAGGGCATTTTAAGATTAATCCTTATACAGAAAATGGCAAAAGTATTGCA
CCTTTTGTGGAGCAGTACAAGTCGATTACGGGCTTTGAAGCCAATCTTCACCTTTCTAGAGCCCGACATTTGGTTAAGCT
AGATAAGCACTCAGCAGGTGAAAAAAAACGTCAAGCGTGGATAGAAAAGATGAAGGAGGAGCTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

55.778

100

0.562

Multiple sequence alignment