Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   HB764_RS23900 Genome accession   NZ_CP050479
Coordinates   1705824..1707005 (-) Length   393 a.a.
NCBI ID   WP_255958635.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1700824..1712005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS23885 (HB764_23705) - 1701863..1702411 (+) 549 WP_005426812.1 GNAT family N-acetyltransferase -
  HB764_RS23890 (HB764_23710) - 1702751..1703368 (-) 618 WP_038891692.1 HAD family phosphatase -
  HB764_RS23895 (HB764_23715) cqsS 1703672..1705717 (+) 2046 WP_255958634.1 response regulator Regulator
  HB764_RS23900 (HB764_23720) cqsA 1705824..1707005 (-) 1182 WP_255958635.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HB764_RS23905 (HB764_23725) ylqF 1707415..1708359 (-) 945 WP_255958636.1 ribosome biogenesis GTPase YlqF -
  HB764_RS23910 (HB764_23730) - 1708856..1709929 (-) 1074 WP_255958637.1 hypothetical protein -
  HB764_RS23915 (HB764_23735) - 1710440..1711126 (+) 687 WP_102349756.1 inovirus-type Gp2 protein -
  HB764_RS23920 (HB764_23740) - 1711361..1711756 (-) 396 WP_255958638.1 lecithin retinol acyltransferase family protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43968.03 Da        Isoelectric Point: 5.9813

>NTDB_id=433235 HB764_RS23900 WP_255958635.1 1705824..1707005(-) (cqsA) [Vibrio campbellii strain LJC011]
MSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQQGAVVMQSNDYLSLSHNLQIQQAHRDAICEHDDNVVMS
AIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAK
TFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRLEKTLEVVRSADDKRTMLFNRAKELRTGLKLIGFHIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=433235 HB764_RS23900 WP_255958635.1 1705824..1707005(-) (cqsA) [Vibrio campbellii strain LJC011]
ATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGA
GCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGACCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACT
TGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCGTGATGCTATCTGCGAGCACGATGATAACGTTGTCATGTCT
GCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTGAAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCT
ATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTACAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATT
TCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGCAGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAAC
CATTTGCGCAAGCAGATACAGCGTCACGGCTCTGGCGTTATCGTTGTGGATTCAGTCTATAGCACGATAGGTACGATCGC
CCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGATTGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACCC
ATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTGGAACTCACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAA
ACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAAAGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCAT
CTTTAGTTCGACGGTCCTTCCACAAGAGATCGTTCGACTTGAAAAGACTCTCGAAGTCGTTAGAAGCGCAGATGATAAGC
GAACCATGCTGTTCAACCGCGCTAAGGAGCTCAGAACAGGCCTAAAGCTGATTGGCTTTCATATCCGCAGCGAATCGCAA
ATTGTGGCTTTAGAGTGCGGTAGTGAGCGAAATACGGAACGAGTACGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGC
TGTATTCTGTCGTCCGGCAACGGGCAAGAATAAGAACATTATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACA
TTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCACCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.667

99.237

0.562