Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SCIM_RS05920 Genome accession   NC_018073
Coordinates   1215026..1217260 (-) Length   744 a.a.
NCBI ID   WP_003076244.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1210026..1222260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS05905 (SCIM_1065) - 1211086..1214187 (-) 3102 WP_003076844.1 DNA polymerase III subunit alpha -
  SCIM_RS09935 - 1214319..1214554 (+) 236 Protein_1166 GntR family transcriptional regulator -
  SCIM_RS09940 - 1214567..1214889 (+) 323 Protein_1167 ATP-binding cassette domain-containing protein -
  SCIM_RS05920 (SCIM_1066) recJ 1215026..1217260 (-) 2235 WP_003076244.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SCIM_RS05925 (SCIM_1067) - 1217359..1217766 (-) 408 WP_003076533.1 GNAT family N-acetyltransferase -
  SCIM_RS09710 - 1217750..1218484 (-) 735 Protein_1170 class I SAM-dependent methyltransferase -
  SCIM_RS05940 (SCIM_1070) - 1218494..1219249 (-) 756 WP_003076807.1 SDR family NAD(P)-dependent oxidoreductase -
  SCIM_RS05945 (SCIM_1071) - 1219259..1219867 (-) 609 WP_003077038.1 histidine phosphatase family protein -
  SCIM_RS05950 (SCIM_1072) rnz 1219913..1220842 (-) 930 WP_003076343.1 ribonuclease Z -
  SCIM_RS05955 (SCIM_1073) - 1220853..1221482 (-) 630 WP_003076627.1 hypothetical protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83656.69 Da        Isoelectric Point: 4.5369

>NTDB_id=43323 SCIM_RS05920 WP_003076244.1 1215026..1217260(-) (recJ) [Streptococcus intermedius JTH08]
MITSKYDWQIATNFSDEGFIKQAQKLGLEPSVANLVYQRGIQTEEALRDFLEASLDKLHDPYELHDMEKAVVRIRQAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIENQEVSLIITVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPEELPKAYAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEMQIELLDLVAIGTIADMVSLTGENR
ILVKYGLSILKNTQRIGLQELFKISGIQEDEVDEEIVGFQITPRLNALGRLDDPNPAIELLTGFDEEEARDIALMINQKN
DERKEMVQHIYDEAKFMIDPKKPVQVLAGKGWNPGVLGIVAGRLLEELHQPIIVLNIENGLAKGSARSIEAVDIFEALDP
HRELFVAFGGHAGAAGMTLDASRLEELSQVLTAYIENNQLDLSTKNELFLDEELALPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKVENARTMGAGNAHLKLKISQADVAFDVIAFGQGELATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVN
GIQLFNIRGKNARLPENVPILRFSEEIPDLGNSRSVVVYDVPNQLEQLKMIIQQGHFEAIYFKNEIAHPYYLTGFGTRAQ
FAKLYKTIYQFPEFDIRYKLKKLAAYLNIDSILLIKMIQIFEELGFVTVQDGVMRVNKEAEKKAIESSHIYQELKKMVKE
QELMALGTVQEIYDYLMEKDECSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=43323 SCIM_RS05920 WP_003076244.1 1215026..1217260(-) (recJ) [Streptococcus intermedius JTH08]
ATGATTACATCAAAATATGATTGGCAAATTGCTACAAATTTTTCAGATGAGGGCTTTATCAAACAAGCTCAAAAACTCGG
ATTGGAACCTTCGGTAGCCAATTTGGTATACCAGAGAGGGATTCAGACAGAAGAAGCACTGCGAGACTTTCTAGAAGCTA
GTTTAGACAAGCTACACGATCCTTATGAACTTCATGATATGGAGAAGGCGGTAGTACGCATTCGTCAAGCGATTGAAAAC
TATGAGCAGATTTTGATCTATGGCGATTATGATGCAGATGGGATGACTTCAGCTTCTATTGTTAAAGAAGCGTTAGAACA
ATTGGGAGCGGAGTGTCAAGTCTATTTACCCAATCGATTTACAGATGGTTATGGACCTAATGCTAGTGTTTACAAGTATT
TTATTGAAAATCAAGAAGTCTCACTCATTATTACAGTGGACAATGGTGTTGCAGGACATGAAGCAATTGAGTTAGCCCAG
TCCATGGGAGTGGATGTCATCGTAACAGATCACCACTCTATGCCTGAGGAGCTGCCAAAGGCCTATGCTATCGTCCATCC
GGAACATAGCGGAGCAGATTACCCTTTCAAGCATCTGGCTGGCTGTGGGGTGGCTTTTAAGTTAGCGACTGCCCTTTTAG
AGGAAATGCAGATTGAGTTGTTGGATCTAGTCGCTATCGGCACTATTGCGGATATGGTCAGCTTGACAGGTGAGAATCGG
ATTTTGGTCAAATATGGCTTATCTATTTTGAAAAACACTCAGCGCATCGGCTTGCAAGAACTTTTTAAGATTTCGGGCAT
TCAGGAAGATGAAGTAGATGAAGAAATAGTTGGTTTTCAGATAACTCCTAGACTCAATGCTCTAGGTCGATTGGATGATC
CAAATCCTGCTATTGAACTTCTGACTGGTTTTGATGAAGAAGAAGCACGTGACATCGCCCTGATGATTAATCAAAAAAAT
GACGAACGTAAGGAGATGGTGCAGCATATCTATGATGAAGCTAAGTTTATGATTGATCCTAAGAAGCCTGTTCAGGTTCT
AGCTGGCAAGGGTTGGAATCCAGGTGTTTTGGGAATTGTAGCAGGGCGACTTTTAGAAGAGTTGCATCAGCCGATCATCG
TGCTGAATATTGAAAATGGTTTAGCAAAAGGTAGTGCTCGCAGTATTGAAGCAGTTGATATTTTTGAAGCTCTAGATCCT
CACCGAGAGTTATTTGTAGCTTTTGGTGGGCATGCTGGGGCAGCTGGCATGACTCTTGACGCCAGTCGATTAGAAGAACT
CAGTCAGGTTTTGACGGCCTATATTGAAAATAATCAGCTGGATTTGTCTACTAAGAATGAACTTTTTTTGGATGAAGAAC
TAGCTTTGCCAGATCTGACGCTGGAAACTCTTAAAAACTTTGAAAAACTTGCTCCTTTTGGTATGGATAATAAAAAACCT
GTTTTCTATTTAAAAGATTTTAAAGTTGAAAATGCTCGTACTATGGGGGCAGGAAATGCTCACCTGAAACTAAAAATTTC
TCAGGCTGATGTTGCTTTTGATGTAATAGCTTTTGGACAAGGCGAACTTGCCACAGAATTTTCTCAAACTAAAAATTTAG
AGTTAGCAGTGACTCTGTCGGTCAACAAATGGAATGGTCAGACTAGTCTGCAACTTATGTTGGTAGACGCTCGAGTCAAC
GGAATTCAGCTCTTTAATATTCGAGGTAAAAATGCTCGCTTACCTGAAAATGTACCTATTCTGCGTTTTTCAGAAGAAAT
ACCTGATTTGGGAAACAGTAGATCAGTTGTGGTCTATGACGTCCCCAATCAACTAGAACAACTAAAAATGATTATTCAAC
AAGGACATTTTGAAGCCATTTACTTTAAAAATGAGATTGCTCACCCCTATTATCTGACAGGTTTTGGAACGAGAGCCCAA
TTTGCCAAACTCTATAAAACGATTTATCAGTTTCCGGAGTTTGATATACGTTATAAACTAAAAAAGTTGGCTGCTTATCT
CAACATTGATTCAATTCTACTCATAAAGATGATTCAAATTTTTGAAGAACTGGGTTTTGTAACGGTTCAAGATGGAGTGA
TGCGAGTTAACAAGGAAGCAGAAAAAAAGGCTATTGAGAGTAGCCATATTTATCAAGAACTTAAAAAAATGGTCAAGGAG
CAGGAGCTGATGGCTCTAGGAACTGTTCAAGAAATTTATGATTATCTGATGGAAAAGGATGAATGTTCAAACTAG

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-434)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(593-734)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

74.189

99.462

0.738
  recJ Bacillus subtilis subsp. subtilis str. 168

37.565

100

0.39

Multiple sequence alignment