Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HB764_RS12805 Genome accession   NZ_CP050478
Coordinates   2740469..2740987 (-) Length   172 a.a.
NCBI ID   WP_010643243.1    Uniprot ID   A0A8H8YN21
Organism   Vibrio campbellii strain LJC011     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2735469..2745987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS12780 (HB764_12665) rimM 2735525..2736073 (-) 549 WP_255957065.1 ribosome maturation factor RimM -
  HB764_RS12785 (HB764_12670) rpsP 2736101..2736349 (-) 249 WP_005438039.1 30S ribosomal protein S16 -
  HB764_RS12790 (HB764_12675) ffh 2736560..2737942 (-) 1383 WP_005462555.1 signal recognition particle protein -
  HB764_RS12795 (HB764_12680) - 2738156..2738950 (+) 795 WP_255957066.1 inner membrane protein YpjD -
  HB764_RS12800 (HB764_12685) - 2739106..2740380 (+) 1275 WP_255899264.1 HlyC/CorC family transporter -
  HB764_RS12805 (HB764_12690) luxS 2740469..2740987 (-) 519 WP_010643243.1 S-ribosylhomocysteine lyase Regulator
  HB764_RS12810 (HB764_12695) - 2741078..2741641 (-) 564 WP_012128887.1 hypothetical protein -
  HB764_RS12815 (HB764_12700) gshA 2741703..2743271 (-) 1569 WP_255957067.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19086.84 Da        Isoelectric Point: 4.7297

>NTDB_id=433211 HB764_RS12805 WP_010643243.1 2740469..2740987(-) (luxS) [Vibrio campbellii strain LJC011]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=433211 HB764_RS12805 WP_010643243.1 2740469..2740987(-) (luxS) [Vibrio campbellii strain LJC011]
ATGCCTTTATTAGACAGCTTTACCGTTGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTTGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ACACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGACAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCCGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGCATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86