Detailed information NTG0433205

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: HB764_RS12530
• Genome accession: NZ_CP050478
• Coordinates: 2669798..2673184 (+)
• Length: 1128 a.a.
• NCBI ID: WP_255957035.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LJC011
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2664798..2678184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB764_RS12505 (HB764_12395)	erpA	2665140..2665481 (-)	342	WP_005425270.1	iron-sulfur cluster insertion protein ErpA	-
HB764_RS12510 (HB764_12400)	hemL	2665728..2667023 (+)	1296	WP_005425271.1	glutamate-1-semialdehyde 2,1-aminomutase	-
HB764_RS12515	-	2667119..2667247 (-)	129	WP_255958206.1	hypothetical protein	-
HB764_RS12520 (HB764_12405)	-	2667383..2668468 (+)	1086	WP_005425277.1	AI-2E family transporter	-
HB764_RS12525 (HB764_12410)	rsmC	2668545..2669570 (+)	1026	WP_255957034.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
HB764_RS12530 (HB764_12415)	chiS	2669798..2673184 (+)	3387	WP_255957035.1	response regulator	Regulator
HB764_RS12535 (HB764_12420)	-	2674004..2675686 (+)	1683	WP_005531772.1	ABC transporter substrate-binding protein	-
HB764_RS12540 (HB764_12425)	-	2675857..2676843 (+)	987	WP_255957036.1	ABC transporter permease	-
HB764_RS12545 (HB764_12430)	-	2676846..2677871 (+)	1026	WP_010649800.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127290.02 Da
• Isoelectric Point: 5.2929

>NTDB_id=433205 HB764_RS12530 WP_255957035.1 2669798..2673184(+) (chiS) [Vibrio campbellii strain LJC011]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLEEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGHDIDEARENAQQRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNFGTNLLSGRYKDTALGKTFKRLSEDVSARRKVNEDYTPVVVSDFDIENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIAEINRDSSIDTLLVGSDHKPRTINTKQEDIQNSLEIVDKALAGETEVGTYSNRLGEE
MIAAFAPIETRGLTWALVVQLPEKEAFARVHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATVVDDQVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIKATESLAARGHFQIPEANFDNNDDLSLPENPD
GPLLYIADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASQAEMRHIENKLLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQELMREVLVDTMTHA
LEYWESVTGETKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KMQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=433205 HB764_RS12530 WP_255957035.1 2669798..2673184(+) (chiS) [Vibrio campbellii strain LJC011]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGCCTGCAAAGCACGCTAATGACCGCGTTTTTGGTTCTTAGTATTAC
GCCACTGACGATCACTGCTATTTTCTTCCTCCAATCCCACAGTAAAGATTTGGAAGAACAGAGCACATCCCACTTGCTCT
CAGTCCGTGATACCAAACAACAACAGATCATCGACTACTTTGCAGCTCAAGAAACCGAAGTTATGGGCTTTGTTCGCTCA
GAATTGGCTTATGCCAGTGGCGGACGCTTCTACGGTTTGGTCAATGCCTTTAGCCGATTAGGCCACGACATCGACGAAGC
AAGAGAGAATGCACAGCAACGCTATATCAAAGGCAGCGGCGATCAAATCAAAACGTCGATTTTACCGGAATCTTCCAACT
ACGTTGGTAGTGAGCGTTATCGTCTTCTGCATAAACGTTATCACTGGGCTTACCTAGAGCTATTAAAGCGCTCTGATTTC
AACGATATTTTATTAGTTGATATCGACGGTAACGTTACTTATTCGATCAATAAAGATGATAACTTCGGCACCAACCTCCT
CAGCGGCCGTTACAAAGACACCGCTTTGGGAAAAACATTTAAACGCCTCTCCGAGGATGTAAGCGCGCGCCGAAAAGTGA
ATGAAGATTACACGCCTGTCGTGGTATCCGACTTTGACATTGAAAACGGTAAGCAAGTCGCTTGGTTGGGTGCGCCTATT
GTTCAGCAAGGCTATCTGCACAGCTATGCAATGTTCCGCTTGCCGAACAATGGCATCACAAAGCTGATTGCAGAAATCAA
TCGTGACTCTTCAATTGATACCTTATTAGTTGGCAGTGACCACAAACCTCGTACCATCAACACCAAGCAAGAAGACATCC
AAAACAGTTTAGAGATCGTCGACAAAGCTTTAGCTGGCGAAACGGAAGTGGGTACATACAGCAACCGTTTAGGCGAAGAG
ATGATTGCGGCATTTGCACCTATTGAGACTCGCGGTCTCACTTGGGCTCTCGTTGTACAGCTTCCTGAGAAAGAGGCCTT
TGCACGTGTCCATCAGCTCGAGAAACTGTTTGTCATTGCGATGCTAATAGCGATCATCTTGGTTGTGATTGCTTCACACT
ACTTATCTAATTTCATCACATCTCCGCTGCTTAAGCTGACTTGGGCAGCAGAGAAAGTATCTGCTGGCGATCTGGACGAA
ACCACCTTTAATACCGAACGTAAAGATGAAATCGGTCGACTAGCGATCAGCTTTGAGCGTATGCAGCGCTCAATTCGTGA
AAAGATCCAAACTATCAAGCAACAAAACGAAGAGCTAGAGAGCAACATCAAACTGATCCAAAAGCAAAACGAAGAATTGC
AGTTGGCAGATAAGCTGAAAGATGAATTCCTAGCGACAACCTCTCACGAGTTACGCACACCATTGCACGGTATGGTTGGC
ATTGCAGAGACACTGGTGTCTGGTGCAAATGGCGCGATACCTGCGAGCCAGAAGTACCAATTGGACATCATCATCAAGAG
TGGTCAGCGCCTAGCAAACCTCGTTGATGATCTATTGGATTACCACAAGATGCGCTACGGCAGCATGGATATCCAAAAGT
CTGCAGTGAGCCTAGCCAGTGCAACACGCTTGGTGCTGGAGCTTTCTGGTCACCTATTGGGTAACAAAACCATCCGCATC
ATTAATCAAGTGCCAGCGGATCTGAAAGCAGTCTCAGCAGATCCTCAGCGTTTGGAACAGGTGCTGTATAACTTGATTGG
CAACGCTATTAAGTACACTTCAGAAGGCAAAATCGTTATCTCAGCGACCGTTGTAGACGATCAAGTCCGAGTACAAGTGG
TCGATACTGGTCAGGGTATTCCAGCTGAACACCTAGAGCATATCTTCGAACCTCTTATCCAAGCAGGTCAAGATGCTAGT
CGCTACCGCCAAGGTGCAGGTCTAGGTCTATCAATCAGCCGTCAACTTATCGAGTTGATGGGCGGTTCATTGTATGTCAG
CAGCCAACCTATGGTCGGAACGACATTCAGCTTCACCTTGCCACTCGCTAGTGAAGAAGAAATCAAAGCGACGGAAAGCC
TTGCCGCTCGCGGGCATTTCCAAATTCCAGAAGCGAACTTTGACAACAATGACGACTTGTCTCTACCTGAAAACCCAGAT
GGTCCATTGCTGTACATTGCTGATGATGAGCCCGTCAACCTGCGCGTTCTTGAAAGCTTCTTAAGACTTGAAGGCTACCG
AGTTCGTACCATTTCAGACGGCCCTGAGACACTCGCTTTAATTGAACAAGAGAAGCCTGAGTTGCTGCTACTGGATATTA
TGATGCCAGGCATGAGTGGCTATCAGGTTTGTAGTGAACTGCGTGAAACTTACGATCATGCAGAGCTGCCAATCATTATG
CTCACAGCGCTAAGCCAAACCGAAGACCGCGTTAGGGGCTTTGAAGCGGGAGCGAACGATTACCTAACCAAACCATTTAA
TAAGCAAGAGCTCGCGGCACGTATTCAGGCCCACTTGACGGCAAGTCAGGCTGAAATGCGCCACATCGAGAACAAGTTAC
TGGAATCGGAGCTACGCCAGCGTGCTGAAGTCGAAGCCAGCCTGCTCGAGACACAAGGTAGACTGCTAGAACAGCTAGAA
TCGGCACCTGAGGCGATTATTTGTCTTCGTGAAGATCAACGTATTCGCTTTGCTAACGAAGCAGCATGTAAGCTATTTAA
ACGTAGCCTAGAACAGCTAAAACGTTCTTCCGCTGATGAGCTAATTGCACCTAAGTTCCTTACGGTTAAGCAGCCGCACT
ACTGTGGCAAGATTGATATCTACATCGAAGATATTCGTCAAAACATTGAAGCAGACATCCTCAAGCTGCCTGAAGGCTCT
GGTTTAGATGTCATGTATATCTTCAATGTAGGAGGCGGAGCGAATGCAGCTCGTATCCATAACCTAGAGACGGCAGTTGA
AGTACTTTCAAGTTACGCATTTGATGGTGATAAAGACCAGCTGCAGAAGCTGAAAGAACTTGGCGGTGAGTTTACTCGCC
TTGCTGATAAAGCATTGGGTAACAAGAAGGACAAACAAGAGCTGATGCGCGAAGTATTAGTCGATACGATGACTCATGCA
TTGGAATATTGGGAATCGGTGACTGGAGAAACCAAGTTTGCCTTTGCTGAACAAAGTGGTTTATGGCGCGTCTACCTCGA
CCGCAGTACATTGCAAACACGTACGCTCGATAAATACATGCGTATTGAGACTTTGCCTAAGACACCGCGCTGGAGGACAG
TACTAAGCTCAATTGAGTTCATTCTGGAGCACTGTAAAGAACAAAGCCCAGAACGCGCTTACATAGAGGCACAGCGCGAT
AAGATGCAAAGACTCCTTACGAGCTAA

Domains

Predicted by InterproScan.

• HAMP domain (HAMP) (375-427)

• Response regulator receiver domain (Response_reg) (725-836)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.705	100	0.768