Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   HB764_RS10610 Genome accession   NZ_CP050478
Coordinates   2264950..2266353 (-) Length   467 a.a.
NCBI ID   WP_255956834.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2259950..2271353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS10575 (HB764_10470) moaE 2260483..2260938 (-) 456 WP_255956828.1 molybdopterin synthase catalytic subunit MoaE -
  HB764_RS10580 (HB764_10475) moaD 2260940..2261197 (-) 258 WP_134977429.1 molybdopterin synthase sulfur carrier subunit -
  HB764_RS10585 (HB764_10480) moaC 2261197..2261673 (-) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  HB764_RS10590 (HB764_10485) moaB 2261700..2262212 (-) 513 WP_255956829.1 molybdenum cofactor biosynthesis protein B -
  HB764_RS10595 (HB764_10490) moaA 2262312..2263301 (-) 990 WP_255956831.1 GTP 3',8-cyclase MoaA -
  HB764_RS10600 (HB764_10495) - 2263599..2264492 (+) 894 WP_255956832.1 YvcK family protein -
  HB764_RS10605 (HB764_10500) luxU 2264609..2264953 (-) 345 WP_255956833.1 quorum-sensing phosphorelay protein LuxU -
  HB764_RS10610 (HB764_10505) luxO 2264950..2266353 (-) 1404 WP_255956834.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  HB764_RS10615 (HB764_10510) uvrB 2266696..2268726 (-) 2031 WP_255956835.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52121.68 Da        Isoelectric Point: 6.2518

>NTDB_id=433204 HB764_RS10610 WP_255956834.1 2264950..2266353(-) (luxO) [Vibrio campbellii strain LJC011]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGKDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNVVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=433204 HB764_RS10610 WP_255956834.1 2264950..2266353(-) (luxO) [Vibrio campbellii strain LJC011]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTATTAATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACAGCCCATGGTTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGTACC
ATTGACTCGGCAGCGAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCCGAAGC
GATTCACGCAGCAAGCAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAAGACCTTATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAACTCTGTGAAATGGACTTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTACGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTGCACCTTCCGCCGCTGCGTGAG
CGTGGTAAAGATGTTATTGAAATTGCATACTCGCTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCGGGTAACGTTCGCCAATTGCAAAACGTATTACGTAATG
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATTATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTTAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.607

95.931

0.831