Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HB764_RS06765 Genome accession   NZ_CP050478
Coordinates   1464637..1466058 (-) Length   473 a.a.
NCBI ID   WP_255958027.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1459637..1471058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS06740 (HB764_06710) - 1460313..1460963 (+) 651 WP_255958023.1 thiopurine S-methyltransferase -
  HB764_RS06745 (HB764_06715) purT 1461050..1462225 (-) 1176 WP_255958024.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  HB764_RS06750 (HB764_06720) cdd 1462373..1463260 (-) 888 WP_255958025.1 cytidine deaminase -
  HB764_RS06755 (HB764_06725) - 1463525..1464202 (-) 678 WP_009705896.1 LrgB family protein -
  HB764_RS06760 (HB764_06730) - 1464204..1464578 (-) 375 WP_255958026.1 CidA/LrgA family protein -
  HB764_RS06765 (HB764_06735) sbcB 1464637..1466058 (-) 1422 WP_255958027.1 exodeoxyribonuclease I Machinery gene
  HB764_RS06770 (HB764_06740) - 1466220..1466900 (-) 681 WP_255958028.1 DUF1826 domain-containing protein -
  HB764_RS06775 (HB764_06745) - 1467127..1468500 (-) 1374 WP_005528200.1 L-cystine transporter -
  HB764_RS06780 (HB764_06750) - 1468694..1469389 (-) 696 WP_255958029.1 NAD(P)H-binding protein -
  HB764_RS06785 (HB764_06755) - 1470046..1470657 (+) 612 WP_255958030.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54499.75 Da        Isoelectric Point: 4.8720

>NTDB_id=433202 HB764_RS06765 WP_255958027.1 1464637..1466058(-) (sbcB) [Vibrio campbellii strain LJC011]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPSADYLPSPDAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENDEGFT
SFKLEHLSVANGVEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARYYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=433202 HB764_RS06765 WP_255958027.1 1464637..1466058(-) (sbcB) [Vibrio campbellii strain LJC011]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAATTCGCTGGCGTTCGTACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGTCCGCTG
ATTACCTTCCTTCACCAGACGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAATAGCATTCGCTTCGATGA
CGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCATAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAACATTTATCCGTAGCAAATGGTGTTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGGTTGC
AACGATTGAGATGGCGAAGAAAGTGAAGGCCGCTCAACCAAAACTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCGTTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTCATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGTGACGAATTGGGTGACCTGCTGCCTG
TACCCGTTAAGCTTGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCTTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAGCGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGTTTCTTCTCTCCAGCTG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGCTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTTACTATGCTGGCACCTTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.647

100

0.786