Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   HB763_RS12160 Genome accession   NZ_CP050475
Coordinates   2632324..2633865 (-) Length   513 a.a.
NCBI ID   WP_255984269.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC012     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2627324..2638865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS12140 (HB763_12150) - 2627339..2628760 (-) 1422 WP_255985783.1 lipopolysaccharide biosynthesis protein -
  HB763_RS12145 (HB763_12155) - 2628753..2629925 (-) 1173 WP_255984266.1 glycosyltransferase family 4 protein -
  HB763_RS12150 (HB763_12160) - 2629936..2631120 (-) 1185 WP_005528355.1 glycosyltransferase -
  HB763_RS12155 (HB763_12165) - 2631273..2632349 (-) 1077 WP_255984267.1 glycosyltransferase -
  HB763_RS12160 (HB763_12170) luxO 2632324..2633865 (-) 1542 WP_255984269.1 sigma-54 dependent transcriptional regulator Regulator
  HB763_RS12165 (HB763_12175) - 2634076..2634459 (-) 384 WP_010647718.1 Hpt domain-containing protein -
  HB763_RS12170 (HB763_12180) - 2634472..2635161 (-) 690 WP_255984271.1 AAA family ATPase -
  HB763_RS12175 (HB763_12185) - 2635161..2637263 (-) 2103 WP_255984272.1 SLBB domain-containing protein -
  HB763_RS12180 (HB763_12190) - 2637260..2638114 (-) 855 WP_255984273.1 OmpA family protein -
  HB763_RS12185 (HB763_12195) - 2638140..2638460 (-) 321 WP_005528376.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 57464.49 Da        Isoelectric Point: 6.0776

>NTDB_id=433175 HB763_RS12160 WP_255984269.1 2632324..2633865(-) (luxO) [Vibrio campbellii strain LJC012]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIESNKPQLIILDLKLPDMSGEDVLDWINENEIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPIKADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
LTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATIDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VMLAKHFLLTYSKQDKKKFKHIGNDVQHVIKSYDWPGNVRQLQNIIRTIVVLNDDDKVTLTHLPVQLTRKPKKTPSVSPA
NAESAEETSFITEQTYSVQNEASPTSEPTSAAYSFSEPESQPTISGVQRASVYFNSDGSIRPMWKVEREAIQNAIAYCDG
NVLNAAVMLELSPSTVYRKKQAWEADEANLKQS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=433175 HB763_RS12160 WP_255984269.1 2632324..2633865(-) (luxO) [Vibrio campbellii strain LJC012]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTACAAGCAGTACGTCAAAGATGAACCTTA
CGACATTTTTCACGTTGAAACTGGCCGTGAGGCGATTCAATTCATTGAGAGCAACAAACCACAACTTATTATTCTCGACC
TAAAACTTCCAGACATGTCCGGTGAAGACGTTCTTGATTGGATTAATGAGAATGAGATTCCAACCTCTGTCATCATCGCA
ACGGCGCATGGTAGCGTTGATCTAGCCGTCAACCTGATCCAGAAAGGCGCAGAAGATTTCCTAGAAAAGCCCATCAAGGC
AGATCGTTTGAAAACCTCCGTTGCCTTGCATTTAAAACGCGCCAAACTAGAAAATCTCGTCGAGAACATTCAATCGACTT
TCGATCGTCACAACTATCACGGATTTATTGGCTCTAGTCTTCCAATGCAGGCGGTTTACAAAACCATTGATGCAGTTGCC
CTGACCTCAGCTAGCGTCTTTATCGTTGGTGAAAGTGGTACAGGTAAAGAAGTGTGTGCCGAAGCGGTTCACCGACAAAG
TGATCGCAGAGACAAGCCATTCATTGCAATTAACTGCGGCGCTATCCCTCGTGATTTGATGGAAAGCGAAATATTTGGCC
ATGTAAAGGGGGCTTTCACTGGCGCTACCATCGATCGTAAAGGTGCAGCGACCCTTGCTCATGGTGGCACACTATTCTTG
GACGAACTGTGTGAAATGGAGCTAGAGATGCAGAAAAAGTTATTACGCTTTCTGCAAACGGGAACCTACACGCCTCTCGG
GGGCACCAAAGAGATGAAAGTCGATGTTCGTATTATCTGTGCAACCAACAGAGACCCTCTGAAAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTGTATTATCGCGTTCATGTCGTCCCCATCGACATGCCGCCGCTAAGAGAAAGAGGCAGTGACATT
GTCATGCTAGCGAAGCACTTTTTGCTCACTTATTCCAAACAAGATAAGAAGAAGTTCAAACACATCGGTAACGACGTTCA
GCATGTCATTAAGAGCTACGACTGGCCAGGGAATGTTCGCCAGCTACAAAATATCATTCGTACCATTGTTGTATTAAATG
ATGACGATAAGGTAACGCTAACGCACTTGCCTGTTCAACTGACTCGTAAGCCGAAAAAGACGCCTTCTGTATCGCCTGCG
AATGCTGAGAGCGCAGAGGAAACAAGCTTCATTACCGAACAAACCTACTCCGTGCAGAATGAAGCCTCCCCAACCTCAGA
GCCAACAAGCGCCGCCTATTCTTTCTCTGAGCCTGAAAGCCAACCAACTATCTCTGGAGTACAAAGGGCTTCAGTCTATT
TCAATTCAGACGGCAGCATTCGTCCGATGTGGAAAGTCGAGCGAGAGGCGATTCAAAACGCAATTGCTTACTGTGATGGA
AACGTACTTAACGCTGCGGTGATGTTGGAACTCAGCCCCTCAACGGTCTATCGCAAAAAACAAGCTTGGGAAGCGGATGA
AGCTAATCTCAAACAATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(463-499)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.598

97.076

0.481