Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HB763_RS11740 Genome accession   NZ_CP050475
Coordinates   2538079..2539500 (-) Length   473 a.a.
NCBI ID   WP_050913411.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC012     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2533079..2544500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS11715 (HB763_11730) purT 2533669..2534844 (-) 1176 WP_255984161.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  HB763_RS11720 (HB763_11735) - 2535053..2535751 (+) 699 WP_050905665.1 hypothetical protein -
  HB763_RS11725 (HB763_11740) cdd 2535815..2536702 (-) 888 WP_255984162.1 cytidine deaminase -
  HB763_RS11730 (HB763_11745) - 2536967..2537644 (-) 678 WP_005528192.1 LrgB family protein -
  HB763_RS11735 (HB763_11750) - 2537646..2538020 (-) 375 WP_012127845.1 CidA/LrgA family protein -
  HB763_RS11740 (HB763_11755) sbcB 2538079..2539500 (-) 1422 WP_050913411.1 exodeoxyribonuclease I Machinery gene
  HB763_RS11745 (HB763_11760) - 2539662..2540342 (-) 681 WP_255984164.1 DUF1826 domain-containing protein -
  HB763_RS11750 (HB763_11765) - 2540570..2541943 (-) 1374 WP_005528200.1 L-cystine transporter -
  HB763_RS11755 (HB763_11770) - 2542137..2542832 (-) 696 WP_255984165.1 NAD(P)H-binding protein -
  HB763_RS11760 (HB763_11775) - 2543498..2544109 (+) 612 WP_255984166.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54511.81 Da        Isoelectric Point: 4.9269

>NTDB_id=433174 HB763_RS11740 WP_050913411.1 2538079..2539500(-) (sbcB) [Vibrio campbellii strain LJC012]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=433174 HB763_RS11740 WP_050913411.1 2538079..2539500(-) (sbcB) [Vibrio campbellii strain LJC012]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCACCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGGCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACTACTAGCCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAACATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGATTGC
AACGATTGAGATGGCGAAGAAAGTCAAAGCCGCTCAACCAAAACTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCGTTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGTGACGAATTGGGTGACCTGCTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCTTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAGCGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCACCAGCTG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGCTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCTTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAACTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795