Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   SCIM_RS05045 Genome accession   NC_018073
Coordinates   1043792..1044262 (-) Length   156 a.a.
NCBI ID   WP_003072602.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1038792..1049262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS05025 (SCIM_0904) - 1038820..1039371 (-) 552 WP_003076866.1 GNAT family N-acetyltransferase -
  SCIM_RS05030 (SCIM_0905) - 1039450..1040709 (-) 1260 WP_003076758.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SCIM_RS05035 (SCIM_0906) metK 1041046..1042236 (-) 1191 WP_003076610.1 methionine adenosyltransferase -
  SCIM_RS05040 (SCIM_0907) - 1042506..1043780 (-) 1275 WP_003076495.1 dihydroorotase -
  SCIM_RS05045 (SCIM_0908) mutX 1043792..1044262 (-) 471 WP_003072602.1 NUDIX hydrolase Machinery gene
  SCIM_RS05050 (SCIM_0909) - 1044289..1044942 (-) 654 WP_003072601.1 uracil-DNA glycosylase -
  SCIM_RS05055 (SCIM_0910) - 1044967..1045953 (-) 987 WP_003076968.1 Gfo/Idh/MocA family protein -
  SCIM_RS05060 (SCIM_0911) - 1046389..1047102 (-) 714 WP_003076424.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18147.62 Da        Isoelectric Point: 4.5298

>NTDB_id=43317 SCIM_RS05045 WP_003072602.1 1043792..1044262(-) (mutX) [Streptococcus intermedius JTH08]
MVKLATICYVDNGKEFLMLHRNKKPNDVHAGKWIGVGGKLENGETPQECAVREIFEETGLRVKKPILKGIITFPEFTPNH
DWYTYVFKVTEFEGELIDCDEGTLEWVPYEQVLSRPTWEGDLTFISWILEEKPFFSAKFSYKGETLVESHVDFYED

Nucleotide


Download         Length: 471 bp        

>NTDB_id=43317 SCIM_RS05045 WP_003072602.1 1043792..1044262(-) (mutX) [Streptococcus intermedius JTH08]
ATGGTTAAATTAGCAACGATTTGCTATGTGGACAATGGAAAAGAATTTCTGATGTTACATCGAAATAAAAAGCCCAATGA
TGTCCATGCTGGCAAGTGGATTGGTGTTGGTGGAAAATTAGAAAATGGAGAAACACCACAGGAGTGTGCTGTCCGAGAAA
TCTTTGAAGAGACGGGATTGCGCGTGAAAAAGCCGATATTAAAAGGTATTATCACTTTTCCAGAGTTTACACCGAACCAT
GACTGGTACACTTATGTATTTAAAGTGACAGAGTTTGAGGGAGAACTGATTGACTGCGATGAAGGTACTTTAGAATGGGT
ACCTTATGAACAAGTTCTATCTAGACCAACTTGGGAGGGAGATCTTACTTTTATATCTTGGATTTTAGAAGAAAAACCGT
TTTTCTCGGCTAAATTTTCTTATAAAGGAGAGACGTTAGTGGAGAGCCATGTTGATTTTTATGAAGATTAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(5-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

78.71

99.359

0.782

Multiple sequence alignment