Detailed information NTG0433164

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: HB763_RS06260
• Genome accession: NZ_CP050475
• Coordinates: 1340002..1341009 (-)
• Length: 335 a.a.
• NCBI ID: WP_005429951.1
• Uniprot ID: A0A0A3FEU3
• Organism: Vibrio campbellii strain LJC012
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1335002..1346009

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB763_RS06240 (HB763_06260)	-	1335360..1336277 (-)	918	WP_010646387.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
HB763_RS06245 (HB763_06265)	hslU	1337254..1338585 (-)	1332	WP_255985614.1	HslU--HslV peptidase ATPase subunit	-
HB763_RS06250 (HB763_06270)	hslV	1338615..1339166 (-)	552	WP_005435051.1	ATP-dependent protease subunit HslV	-
HB763_RS06255 (HB763_06275)	-	1339282..1339833 (-)	552	WP_005429952.1	SPOR domain-containing protein	-
HB763_RS06260 (HB763_06280)	cytR	1340002..1341009 (-)	1008	WP_005429951.1	DNA-binding transcriptional regulator CytR	Regulator
HB763_RS06265 (HB763_06285)	priA	1341216..1343417 (-)	2202	WP_255985615.1	primosomal protein N'	-
HB763_RS06270 (HB763_06290)	rpmE	1343713..1343931 (+)	219	WP_005429947.1	50S ribosomal protein L31	-
HB763_RS06275 (HB763_06295)	rpsJ	1344405..1344716 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
HB763_RS06280 (HB763_06300)	rplC	1344731..1345360 (+)	630	WP_005435072.1	50S ribosomal protein L3	-
HB763_RS06285 (HB763_06305)	rplD	1345378..1345980 (+)	603	WP_005435074.1	50S ribosomal protein L4	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36912.44 Da
• Isoelectric Point: 6.1645

>NTDB_id=433164 HB763_RS06260 WP_005429951.1 1340002..1341009(-) (cytR) [Vibrio campbellii strain LJC012]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDSAALCQFRHQGYQQALRRAGINKEEQYTVIADFSFDGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide

• Length: 1008 bp

>NTDB_id=433164 HB763_RS06260 WP_005429951.1 1340002..1341009(-) (cytR) [Vibrio campbellii strain LJC012]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCGACGGTATCAAGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAGAGAGTGGAAGATGCCGTACTAGAAGCTGGTTATTCACCAAATTCATTAGCTCGTAACT
TACGCAGAAATGAATCAAAAACCATTGTCACCATCGTACCGGACATTTGCGACCCGTACTTCTCAGAGATCATTCGTGGT
ATTGAAGATGCAGCAATGGAACACGGCTATCTTGTTCTATTGGGCGACAGCGGTCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTTAACTTAGTCTTTACTAAACAAGCAGATGGTATGCTTTTGCTTGGTACTGATCTGCCGTTTGATGTCAGCAAGCCTG
AACAGAAAAACCTGCCACCTATGGTGATGGCGTGTGAATTTGCTCCAGAGTTGGAACTGCCAACCGTTCATATCGATAAC
CTAACCTCAGCCTTTGAAGCAGTGAACTACCTTACTCAGTTAGGTCACAAGCGTATTGCTCAGATCTCTGGCCCAGACTC
TGCTGCTCTATGTCAGTTCCGCCACCAAGGTTACCAACAAGCACTGCGTCGTGCGGGTATTAATAAAGAGGAGCAATACA
CCGTTATTGCCGACTTCTCTTTTGACGGCGGAGTACAAGCCGTGCGTAAACTGCTTGAGCTTCCAGAGCCACCGACCGCT
CTATTCTGTCACTGTGACACGATGGCAATTGGTGCCATTCAAGAAGCAAAGCGCCTAGGTTTGCGTATTCCTCAAGACCT
GTCCGTTGTGGGCTTTGATGACATTCAGTTCGCTCAATATTGCGATCCACCGCTAACCACCATCTCTCAACCTCGTTATG
AGATCGGTCGCCAAGCGATGTTGATGATGCTTGAGTTGCTTAAAGGTCACGACGTACATTCTGGTTCTCGCCTACTCGAG
ACCAAACTTGTTGTGCGTGGTAGTGCAGCGCCACCGCCACTTCGATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A0A3FEU3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	95.783	99.104	0.949
cytR	Vibrio cholerae C6706	90.964	99.104	0.901