Detailed information NTG0433144

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB763_RS02205
• Genome accession: NZ_CP050475
• Coordinates: 487479..488465 (-)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain LJC012
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 482479..493465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB763_RS02190 (HB763_02195)	recA	483017..484060 (-)	1044	WP_005531686.1	recombinase RecA	Machinery gene
HB763_RS02195 (HB763_02200)	pncC	484261..484743 (-)	483	WP_005531683.1	nicotinamide-nucleotide amidase	-
HB763_RS02200 (HB763_02205)	mutS	484829..487390 (+)	2562	WP_255985293.1	DNA mismatch repair protein MutS	-
HB763_RS02205 (HB763_02210)	rpoS	487479..488465 (-)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
HB763_RS02210 (HB763_02215)	-	488546..489469 (-)	924	WP_045384574.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB763_RS02215 (HB763_02220)	-	489484..490110 (-)	627	WP_134976379.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB763_RS02220 (HB763_02225)	surE	490110..490886 (-)	777	WP_255985294.1	5'/3'-nucleotidase SurE	-
HB763_RS02225 (HB763_02230)	truD	490886..491929 (-)	1044	WP_255985295.1	tRNA pseudouridine(13) synthase TruD	-
HB763_RS02230 (HB763_02235)	ispF	491975..492451 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB763_RS02235 (HB763_02240)	ispD	492466..493176 (-)	711	WP_255985296.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HB763_RS02240 (HB763_02245)	ftsB	493178..493459 (-)	282	WP_255985297.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=433144 HB763_RS02205 WP_005425361.1 487479..488465(-) (rpoS) [Vibrio campbellii strain LJC012]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=433144 HB763_RS02205 WP_005425361.1 487479..488465(-) (rpoS) [Vibrio campbellii strain LJC012]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGTATTGCGAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTTACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGA
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTAATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCTCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTTGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGCCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTTGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACTTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857