Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HB763_RS02040 Genome accession   NZ_CP050475
Coordinates   459064..459582 (-) Length   172 a.a.
NCBI ID   WP_010643243.1    Uniprot ID   A0A8H8YN21
Organism   Vibrio campbellii strain LJC012     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 454064..464582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS02015 (HB763_02020) rimM 454120..454668 (-) 549 WP_005534055.1 ribosome maturation factor RimM -
  HB763_RS02020 (HB763_02025) rpsP 454696..454944 (-) 249 WP_005438039.1 30S ribosomal protein S16 -
  HB763_RS02025 (HB763_02030) ffh 455155..456537 (-) 1383 WP_005462555.1 signal recognition particle protein -
  HB763_RS02030 (HB763_02035) - 456751..457545 (+) 795 WP_255985281.1 inner membrane protein YpjD -
  HB763_RS02035 (HB763_02040) - 457701..458975 (+) 1275 WP_005426658.1 HlyC/CorC family transporter -
  HB763_RS02040 (HB763_02045) luxS 459064..459582 (-) 519 WP_010643243.1 S-ribosylhomocysteine lyase Regulator
  HB763_RS02045 (HB763_02050) - 459672..460235 (-) 564 WP_012128887.1 hypothetical protein -
  HB763_RS02050 (HB763_02055) gshA 460297..461865 (-) 1569 WP_255899262.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19086.84 Da        Isoelectric Point: 4.7297

>NTDB_id=433141 HB763_RS02040 WP_010643243.1 459064..459582(-) (luxS) [Vibrio campbellii strain LJC012]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=433141 HB763_RS02040 WP_010643243.1 459064..459582(-) (luxS) [Vibrio campbellii strain LJC012]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGTATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACTTTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCTGAGTTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGCATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86