Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HB762_RS16050 Genome accession   NZ_CP050470
Coordinates   3370027..3370545 (+) Length   172 a.a.
NCBI ID   WP_010643243.1    Uniprot ID   A0A8H8YN21
Organism   Vibrio campbellii strain LJC013     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3365027..3375545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB762_RS16040 (HB762_15955) gshA 3367744..3369312 (+) 1569 WP_255899262.1 glutamate--cysteine ligase -
  HB762_RS16045 (HB762_15960) - 3369374..3369937 (+) 564 WP_012128887.1 hypothetical protein -
  HB762_RS16050 (HB762_15965) luxS 3370027..3370545 (+) 519 WP_010643243.1 S-ribosylhomocysteine lyase Regulator
  HB762_RS16055 (HB762_15970) - 3370634..3371908 (-) 1275 WP_255899264.1 HlyC/CorC family transporter -
  HB762_RS16060 (HB762_15975) - 3372064..3372858 (-) 795 WP_255899266.1 inner membrane protein YpjD -
  HB762_RS16065 (HB762_15980) ffh 3373072..3374454 (+) 1383 WP_255899268.1 signal recognition particle protein -
  HB762_RS16070 (HB762_15985) rpsP 3374665..3374913 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  HB762_RS16075 (HB762_15990) rimM 3374941..3375489 (+) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19086.84 Da        Isoelectric Point: 4.7297

>NTDB_id=433123 HB762_RS16050 WP_010643243.1 3370027..3370545(+) (luxS) [Vibrio campbellii strain LJC013]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=433123 HB762_RS16050 WP_010643243.1 3370027..3370545(+) (luxS) [Vibrio campbellii strain LJC013]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGTATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCTGAGTTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGCATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86