Detailed information NTG0433120

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB762_RS15890
• Genome accession: NZ_CP050470
• Coordinates: 3342205..3343191 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain LJC013
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3337205..3348191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB762_RS15855 (HB762_15770)	ftsB	3337211..3337492 (+)	282	WP_005452106.1	cell division protein FtsB	-
HB762_RS15860 (HB762_15775)	ispD	3337494..3338204 (+)	711	WP_255899235.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HB762_RS15865 (HB762_15780)	ispF	3338219..3338695 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB762_RS15870 (HB762_15785)	truD	3338741..3339784 (+)	1044	WP_255899237.1	tRNA pseudouridine(13) synthase TruD	-
HB762_RS15875 (HB762_15790)	surE	3339784..3340560 (+)	777	WP_255899238.1	5'/3'-nucleotidase SurE	-
HB762_RS15880 (HB762_15795)	-	3340560..3341186 (+)	627	WP_255899240.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB762_RS15885 (HB762_15800)	-	3341201..3342124 (+)	924	WP_255899242.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB762_RS15890 (HB762_15805)	rpoS	3342205..3343191 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
HB762_RS15895 (HB762_15810)	mutS	3343278..3345839 (-)	2562	WP_255899244.1	DNA mismatch repair protein MutS	-
HB762_RS15900 (HB762_15815)	pncC	3345925..3346407 (+)	483	WP_005531683.1	nicotinamide-nucleotide amidase	-
HB762_RS15905 (HB762_15820)	recA	3346608..3347651 (+)	1044	WP_005531686.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=433120 HB762_RS15890 WP_005425361.1 3342205..3343191(+) (rpoS) [Vibrio campbellii strain LJC013]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=433120 HB762_RS15890 WP_005425361.1 3342205..3343191(+) (rpoS) [Vibrio campbellii strain LJC013]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGTATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCGGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTTACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAGCGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATATAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGGCGTGAGATTGGCCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTTGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACTTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857