Detailed information NTG0433088

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: HB762_RS00275
• Genome accession: NZ_CP050470
• Coordinates: 65943..69329 (-)
• Length: 1128 a.a.
• NCBI ID: WP_255899325.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LJC013
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 60943..74329

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB762_RS00260 (HB762_00260)	-	61255..62280 (-)	1026	WP_010649800.1	ABC transporter permease	-
HB762_RS00265 (HB762_00265)	-	62283..63269 (-)	987	WP_005446316.1	ABC transporter permease	-
HB762_RS00270 (HB762_00270)	-	63439..65121 (-)	1683	WP_005531772.1	ABC transporter substrate-binding protein	-
HB762_RS00275 (HB762_00275)	chiS	65943..69329 (-)	3387	WP_255899325.1	response regulator	Regulator
HB762_RS00280 (HB762_00280)	rsmC	69557..70582 (-)	1026	WP_255899327.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
HB762_RS00285 (HB762_00285)	-	70659..71744 (-)	1086	WP_255899329.1	AI-2E family transporter	-
HB762_RS00290 (HB762_00290)	hemL	72105..73400 (-)	1296	WP_005425271.1	glutamate-1-semialdehyde 2,1-aminomutase	-
HB762_RS00295 (HB762_00295)	erpA	73647..73988 (+)	342	WP_005425270.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127247.04 Da
• Isoelectric Point: 5.4469

>NTDB_id=433088 HB762_RS00275 WP_255899325.1 65943..69329(-) (chiS) [Vibrio campbellii strain LJC013]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLEEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGHDIDEARENAQQRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNFGTNLLSGRYKDTALGKTFKRLSEDVSARRKVNEDYTPVVVSDFDIENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIAEINRDSSIDTLLVGSDHKPRTINTKQEDIQNSLEIVDKALAGETEVGTYSNRLGEE
MIAAFAPIETRGLTWALVVQLPEKEAFARVHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATVVDDQVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEKEIKATESLAARGHFQIPEATFNNNDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASQAEMRHIENKLLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQELMREVLVDTMTHA
LEYWESVTGETKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYVEAQRD
KMQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=433088 HB762_RS00275 WP_255899325.1 65943..69329(-) (chiS) [Vibrio campbellii strain LJC013]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGCCTGCAAAGCACGCTAATGACCGCGTTTTTGGTTCTTAGTATTAC
GCCACTGACGATCACTGCTATTTTCTTCCTCCAATCCCACAGTAAAGATTTGGAAGAACAGAGCACATCCCACTTGCTCT
CAGTCCGTGATACCAAACAACAACAGATCATCGACTACTTTGCAGCTCAAGAAACCGAAGTTATGGGCTTTGTTCGCTCA
GAATTGGCTTATGCCAGTGGCGGACGCTTCTACGGTTTGGTCAATGCCTTTAGCCGATTAGGCCACGACATCGACGAAGC
AAGAGAGAATGCACAGCAACGCTATATCAAAGGCAGCGGCGATCAAATCAAAACGTCGATTTTACCGGAATCTTCCAACT
ACGTTGGTAGTGAGCGTTATCGTCTTCTGCATAAACGTTATCACTGGGCTTACCTAGAGCTATTAAAGCGCTCTGATTTC
AACGATATTTTATTAGTTGATATCGACGGTAACGTTACTTATTCGATCAATAAAGATGATAACTTCGGCACCAACCTCCT
CAGCGGCCGTTACAAAGACACCGCTTTGGGAAAAACATTTAAACGCCTCTCCGAGGATGTAAGCGCGCGCCGAAAAGTGA
ATGAAGATTACACGCCTGTCGTGGTATCCGACTTTGACATTGAAAACGGTAAGCAAGTCGCTTGGTTGGGTGCGCCTATT
GTCCAGCAAGGCTATCTGCACAGCTATGCAATGTTCCGCTTGCCGAACAATGGCATCACAAAGCTGATTGCAGAAATCAA
TCGTGACTCTTCAATTGATACCTTATTAGTTGGCAGTGACCACAAACCTCGTACCATCAACACCAAGCAAGAAGACATCC
AAAACAGTTTAGAGATCGTCGACAAAGCTTTAGCTGGCGAAACGGAAGTGGGCACTTACAGCAACCGTCTAGGCGAAGAG
ATGATTGCGGCATTTGCACCTATTGAGACTCGCGGTCTCACTTGGGCTCTTGTTGTACAGCTTCCTGAGAAAGAGGCCTT
TGCACGTGTCCATCAGCTCGAGAAACTGTTTGTCATTGCTATGCTAATAGCGATCATCTTGGTTGTGATTGCTTCACACT
ACTTATCTAATTTCATCACCTCTCCGCTGCTTAAGCTAACTTGGGCAGCAGAGAAAGTATCTGCCGGCGATCTGGACGAA
ACCACCTTTAATACCGAGCGTAAAGATGAAATCGGTCGACTCGCAATCAGCTTTGAGCGTATGCAGCGTTCAATTCGTGA
AAAGATTCAAACCATCAAGCAACAAAACGAAGAGCTAGAGAGCAACATCAAACTGATCCAAAAGCAAAACGAAGAATTGC
AGTTGGCAGATAAGCTGAAAGATGAATTCCTAGCAACGACGTCTCACGAGTTGCGCACACCATTGCACGGTATGGTTGGC
ATTGCAGAGACACTGGTGTCTGGTGCAAATGGCGCGATACCTGCAAGCCAGAAGTACCAATTGGACATCATCATCAAGAG
TGGTCAGCGCCTAGCAAACCTCGTTGATGATCTATTGGATTACCACAAGATGCGCTACGGCAGCATGGATATCCAAAAGT
CTGCAGTGAGCCTAGCAAGTGCAACACGCTTGGTTCTAGAGCTTTCTGGTCACCTATTGGGTAACAAAACCATCCGCATC
ATTAACCAAGTGCCAGCGGATCTGAAAGCAGTCTCAGCAGATCCTCAGCGTTTGGAACAAGTACTGTATAACTTGATTGG
CAACGCTATTAAGTACACTTCAGAAGGCAAAATCGTCATCTCAGCGACCGTTGTAGACGATCAAGTCCGAGTACAAGTGG
TCGATACTGGTCAGGGTATTCCTGCTGAGCACTTAGAGCACATCTTTGAACCTCTCATCCAAGCTGGTCAAGATGCTAGC
CGTTACCGTCAAGGTGCAGGACTGGGTCTATCCATCAGCCGTCAACTTATCGAGTTGATGGGCGGTTCATTGTATGTCAG
TAGCCAACCTATGGTCGGAACGACATTCAGCTTCACCTTGCCACTCGCTAGTGAAAAAGAAATCAAAGCGACGGAAAGCC
TTGCCGCACGCGGGCATTTCCAAATCCCTGAGGCGACATTTAACAACAATGACGACTTGTCTCTACCAGAAAACCCAGAT
GGTCCATTGCTGTACGTTGCTGATGATGAGCCCGTCAACCTTCGCGTTCTTGAAAGCTTCTTAAGGCTTGAAGGCTACCG
AGTTCGTACCATTTCAGACGGCCCTGAGACACTCGCTTTAATTGAGCAAGAAAAGCCAGAGTTGCTGCTACTGGATATTA
TGATGCCAGGCATGAGCGGCTATCAGGTTTGTAGTGAACTGCGTGAAACTTACGATCATGCAGAGCTACCAATCATTATG
CTCACAGCGCTAAGCCAAACCGAAGACCGCGTTAGGGGCTTTGAAGCGGGAGCGAACGATTACCTAACCAAACCATTTAA
CAAGCAAGAGCTCGCGGCACGTATTCAGGCCCACTTGACGGCAAGTCAGGCTGAAATGCGCCACATCGAGAACAAGTTAC
TGGAATCAGAGCTACGCCAGCGTGCTGAAGTCGAAGCCAGCCTGCTCGAGACACAAGGTAGACTGCTAGAACAGCTAGAA
TCGGCACCTGAGGCGATTATTTGTCTTCGTGAAGATCAACGTATTCGCTTTGCTAACGAAGCAGCATGTAAGCTATTTAA
ACGTAGCCTAGAACAGCTAAAACGTTCTTCCGCTGATGAGCTAATTGCACCTAAGTTCCTTACGGTTAAGCAGCCGCACT
ACTGTGGCAAGATTGATATCTACATCGAAGATATCCGTCAAAACATTGAAGCAGACATCCTCAAGCTGCCTGAAGGCTCT
GGTTTAGACGTCATGTATATCTTCAATGTAGGAGGCGGCGCGAATGCAGCTCGTATCCATAACTTAGAGACGGCCGTTGA
AGTACTTTCAAGTTACGCATTTGATGGCGACAAAGACCAGCTGCAGAAACTGAAAGAACTTGGCGGTGAGTTTACTCGCC
TTGCAGATAAAGCATTGGGTAACAAAAAGGACAAACAAGAGCTGATGCGCGAAGTATTAGTCGATACGATGACTCACGCA
TTGGAATATTGGGAATCGGTGACTGGAGAAACCAAGTTTGCCTTTGCTGAACAAAGTGGTTTATGGCGCGTCTACCTCGA
CCGTAGTACATTGCAAACTCGTACGCTCGATAAATACATGCGTATTGAGACTTTGCCTAAGACACCGCGCTGGAGGACAG
TACTAAGCTCAATTGAATTCATTCTGGAGCACTGTAAAGAACAAAGCCCAGAACGCGCTTATGTAGAGGCACAGCGCGAT
AAGATGCAAAGACTCCTTACGAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.705	100	0.768