Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   HB761_RS21080 Genome accession   NZ_CP050468
Coordinates   1121145..1122446 (+) Length   433 a.a.
NCBI ID   WP_255941109.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC014     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116145..1127446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS21065 (HB761_21005) - 1117047..1117145 (+) 99 Protein_1059 ribosome biogenesis GTPase YlqF -
  HB761_RS21070 (HB761_21010) - 1117275..1119269 (-) 1995 WP_255941097.1 hypothetical protein -
  HB761_RS21075 (HB761_21015) ylqF 1119921..1120856 (+) 936 WP_255941099.1 ribosome biogenesis GTPase YlqF -
  HB761_RS21080 (HB761_21020) cqsA 1121145..1122446 (+) 1302 WP_255941109.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HB761_RS21085 (HB761_21025) cqsS 1122553..1124598 (-) 2046 WP_255903262.1 response regulator Regulator
  HB761_RS21090 (HB761_21030) - 1124903..1125520 (+) 618 WP_038891692.1 HAD family phosphatase -
  HB761_RS21095 (HB761_21035) - 1125860..1126408 (-) 549 WP_255941111.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48859.83 Da        Isoelectric Point: 6.3389

>NTDB_id=433079 HB761_RS21080 WP_255941109.1 1121145..1122446(+) (cqsA) [Vibrio campbellii strain LJC014]
MRSLQAHANLCNLTNDIELILVKLYNCQRWRFPVLRRELIMSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKR
PQQGAVVMQSNDYLSLSHNLQIQQAHRDAICEHDDNVVMSAIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRYGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRL
EKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQIVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=433079 HB761_RS21080 WP_255941109.1 1121145..1122446(+) (cqsA) [Vibrio campbellii strain LJC014]
ATGCGGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGACTAATGACATCGAGCTCATATTGGTCAAACTATATAACTG
TCAGCGCTGGCGTTTTCCTGTGTTACGAAGAGAACTTATTATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTG
TTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGAGCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGA
CCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACTTGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCG
TGATGCTATCTGCGAGCACGATGATAACGTTGTCATGTCTGCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTG
AAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCTATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTA
CAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGACTTCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGC
AGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAACCATTTGCGCAAGCAGATACAGCGTTACGGCTCTGGCGTTA
TCGTTGTGGATTCAGTCTATAGCACAATAGGTACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGCATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTAGAACT
CACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAAACATTTGCTTATCGCGCTGGGGCGATTCTTGGTCCAGAAA
AGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCATCTTTAGTTCGACGGTCCTGCCACAAGAGATCGTTCGACTT
GAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGCGAACCATGCTGTTCAATCGAGCTAAGGAGCTCAGAACAGG
CCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAAATTGTGGCGTTAGAATGCGGTAGTGAGCGAAATACGGAAC
GAGTACGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGCTGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATT
ATACGATTTTCGATCAATGCTGATATGACATCTCGTGACATTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCA
CCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.923

90.069

0.513