Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   HB761_RS12510 Genome accession   NZ_CP050467
Coordinates   2671136..2672539 (+) Length   467 a.a.
NCBI ID   WP_005433212.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC014     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2666136..2677539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS12490 (HB761_12475) - 2666160..2667491 (+) 1332 WP_255934882.1 excinuclease ABC subunit B -
  HB761_RS12495 (HB761_12480) - 2667511..2667951 (+) 441 WP_255934884.1 hypothetical protein -
  HB761_RS12505 (HB761_12490) uvrB 2668762..2670792 (+) 2031 WP_255934886.1 excinuclease ABC subunit UvrB -
  HB761_RS12510 (HB761_12495) luxO 2671136..2672539 (+) 1404 WP_005433212.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  HB761_RS12515 (HB761_12500) luxU 2672536..2672880 (+) 345 WP_255899750.1 quorum-sensing phosphorelay protein LuxU -
  HB761_RS12520 (HB761_12505) - 2672997..2673890 (-) 894 WP_255934889.1 YvcK family protein -
  HB761_RS12525 (HB761_12510) moaA 2674188..2675177 (+) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  HB761_RS12530 (HB761_12515) moaB 2675277..2675789 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  HB761_RS12535 (HB761_12520) moaC 2675816..2676292 (+) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  HB761_RS12540 (HB761_12525) moaD 2676292..2676549 (+) 258 WP_255934894.1 molybdopterin synthase sulfur carrier subunit -
  HB761_RS12545 (HB761_12530) moaE 2676551..2677006 (+) 456 WP_010645711.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52136.65 Da        Isoelectric Point: 5.8849

>NTDB_id=433074 HB761_RS12510 WP_005433212.1 2671136..2672539(+) (luxO) [Vibrio campbellii strain LJC014]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=433074 HB761_RS12510 WP_005433212.1 2671136..2672539(+) (luxO) [Vibrio campbellii strain LJC014]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACAGCCCATGGCTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGCAGACCGTTTACGTGTCACGGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGTACC
ATTGACTCGGCAGCAAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCCGAAGC
GATTCACGCAGCAAGTAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAAGACCTTATTGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAGCTCTGTGAAATGGACTTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTACGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTGCACCTTCCGCCGCTGCGTGAG
CGTGGTGAAGATGTTATTGAAATTGCATACTCGCTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCGGGTAACGTTCGCCAATTGCAAAACGTATTACGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATTATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTTAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829