Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HB761_RS10450 Genome accession   NZ_CP050467
Coordinates   2213493..2214011 (+) Length   172 a.a.
NCBI ID   WP_010643243.1    Uniprot ID   A0A8H8YN21
Organism   Vibrio campbellii strain LJC014     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2208493..2219011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS10440 (HB761_10430) gshA 2211210..2212778 (+) 1569 WP_255899262.1 glutamate--cysteine ligase -
  HB761_RS10445 (HB761_10435) - 2212840..2213403 (+) 564 WP_012128887.1 hypothetical protein -
  HB761_RS10450 (HB761_10440) luxS 2213493..2214011 (+) 519 WP_010643243.1 S-ribosylhomocysteine lyase Regulator
  HB761_RS10455 (HB761_10445) - 2214100..2215374 (-) 1275 WP_255899264.1 HlyC/CorC family transporter -
  HB761_RS10460 (HB761_10450) - 2215530..2216324 (-) 795 WP_005438043.1 inner membrane protein YpjD -
  HB761_RS10465 (HB761_10455) ffh 2216538..2217920 (+) 1383 WP_005462555.1 signal recognition particle protein -
  HB761_RS10470 (HB761_10460) rpsP 2218131..2218379 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  HB761_RS10475 (HB761_10465) rimM 2218407..2218955 (+) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19086.84 Da        Isoelectric Point: 4.7297

>NTDB_id=433068 HB761_RS10450 WP_010643243.1 2213493..2214011(+) (luxS) [Vibrio campbellii strain LJC014]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=433068 HB761_RS10450 WP_010643243.1 2213493..2214011(+) (luxS) [Vibrio campbellii strain LJC014]
ATGCCTTTATTAGACAGCTTTACCGTAGACCACACGCGTATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGATAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCCGC
GATGGAAGACGTACTAAAAGTAGAAAACCAAAACAAGATCCCTGAGTTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATCGCGAAGAACATTCTAGAAGCGGGTGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGCATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86