Detailed information NTG0433065

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB761_RS10290
• Genome accession: NZ_CP050467
• Coordinates: 2185670..2186656 (+)
• Length: 328 a.a.
• NCBI ID: WP_255933686.1
• Uniprot ID: A0AAE9SMG0
• Organism: Vibrio campbellii strain LJC014
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2180670..2191656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB761_RS10255 (HB761_10245)	ftsB	2180676..2180957 (+)	282	WP_255933679.1	cell division protein FtsB	-
HB761_RS10260 (HB761_10250)	ispD	2180959..2181669 (+)	711	WP_005531669.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HB761_RS10265 (HB761_10255)	ispF	2181684..2182160 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB761_RS10270 (HB761_10260)	truD	2182206..2183249 (+)	1044	WP_255933683.1	tRNA pseudouridine(13) synthase TruD	-
HB761_RS10275 (HB761_10265)	surE	2183249..2184025 (+)	777	WP_255933684.1	5'/3'-nucleotidase SurE	-
HB761_RS10280 (HB761_10270)	-	2184025..2184651 (+)	627	WP_255933685.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB761_RS10285 (HB761_10275)	-	2184666..2185589 (+)	924	WP_045384574.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB761_RS10290 (HB761_10280)	rpoS	2185670..2186656 (+)	987	WP_255933686.1	RNA polymerase sigma factor RpoS	Regulator
HB761_RS10295 (HB761_10285)	mutS	2186743..2189304 (-)	2562	WP_255933687.1	DNA mismatch repair protein MutS	-
HB761_RS10300 (HB761_10290)	pncC	2189390..2189872 (+)	483	WP_005531683.1	nicotinamide-nucleotide amidase	-
HB761_RS10305 (HB761_10295)	recA	2190073..2191116 (+)	1044	WP_005531686.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37510.42 Da
• Isoelectric Point: 4.7331

>NTDB_id=433065 HB761_RS10290 WP_255933686.1 2185670..2186656(+) (rpoS) [Vibrio campbellii strain LJC014]
MSISNTVTKVEEFEYDNVSTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=433065 HB761_RS10290 WP_255933686.1 2185670..2186656(+) (rpoS) [Vibrio campbellii strain LJC014]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGTATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCGGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTTACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATTGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTAATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGACCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGGCGTGAGATTGGCCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTTGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACTTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857