Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HB761_RS00940 Genome accession   NZ_CP050467
Coordinates   189515..190936 (+) Length   473 a.a.
NCBI ID   WP_255936741.1    Uniprot ID   A0AAE9MYP3
Organism   Vibrio campbellii strain LJC014     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 184515..195936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS00920 (HB761_00905) - 184906..185517 (-) 612 WP_255936738.1 flavin reductase family protein -
  HB761_RS00925 (HB761_00910) - 186183..186878 (+) 696 WP_255936739.1 NAD(P)H-binding protein -
  HB761_RS00930 (HB761_00915) - 187072..188445 (+) 1374 WP_255901331.1 L-cystine transporter -
  HB761_RS00935 (HB761_00920) - 188673..189353 (+) 681 WP_255936740.1 DUF1826 domain-containing protein -
  HB761_RS00940 (HB761_00925) sbcB 189515..190936 (+) 1422 WP_255936741.1 exodeoxyribonuclease I Machinery gene
  HB761_RS00945 (HB761_00930) - 190995..191369 (+) 375 WP_012127845.1 CidA/LrgA family protein -
  HB761_RS00950 (HB761_00935) - 191371..192048 (+) 678 WP_005428010.1 LrgB family protein -
  HB761_RS00955 (HB761_00940) cdd 192313..193200 (+) 888 WP_255936742.1 cytidine deaminase -
  HB761_RS00960 (HB761_00945) - 193265..193963 (-) 699 WP_255936743.1 cytidine deaminase -
  HB761_RS00965 (HB761_00950) purT 194172..195347 (+) 1176 WP_255936745.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54486.78 Da        Isoelectric Point: 4.9196

>NTDB_id=433035 HB761_RS00940 WP_255936741.1 189515..190936(+) (sbcB) [Vibrio campbellii strain LJC014]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPDAALITGITPQKAMQEGLPEP
EFIAKIHTELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKCDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLNNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYNGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=433035 HB761_RS00940 WP_255936741.1 189515..190936(+) (sbcB) [Vibrio campbellii strain LJC014]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGGCCAAG
CCAATTCGCTGGCGTTCGTACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGACGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACACAGAGCTTTCTAAGCCAAATACCACTAGTCTCGGCTACAACAGCATTCGCTTCGATGA
CGAAGTCACACGTTACACCTGTTATCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAGCATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGGTTGC
AACGATTGAGATGGCGAAGAAAGTGAAGGCCGCTCAACCAAAACTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCGTTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTCATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGTGTGACGAATTGGGTGACCTGCTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAACAATTTAGCTTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAGCGTGAATTCGAAAAGAGCGACGACGTAGATACACAGCTTTATAACGGTTTCTTCTCTCCAGCTG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGCTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCTTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGAGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTACACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTGGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.858

100

0.789