Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   HB761_RS00505 Genome accession   NZ_CP050467
Coordinates   89912..91453 (+) Length   513 a.a.
NCBI ID   WP_255936600.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC014     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 84912..96453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS00480 (HB761_00465) - 85317..85637 (+) 321 WP_005528376.1 STAS domain-containing protein -
  HB761_RS00485 (HB761_00470) - 85663..86517 (+) 855 WP_005528374.1 OmpA family protein -
  HB761_RS00490 (HB761_00475) - 86514..88616 (+) 2103 WP_255900551.1 SLBB domain-containing protein -
  HB761_RS00495 (HB761_00480) - 88616..89305 (+) 690 WP_255936555.1 AAA family ATPase -
  HB761_RS00500 (HB761_00485) - 89318..89701 (+) 384 WP_050904803.1 Hpt domain-containing protein -
  HB761_RS00505 (HB761_00490) luxO 89912..91453 (+) 1542 WP_255936600.1 sigma-54 dependent transcriptional regulator Regulator
  HB761_RS00510 (HB761_00495) - 91428..92504 (+) 1077 WP_255936603.1 glycosyltransferase -
  HB761_RS00515 (HB761_00500) - 92657..93841 (+) 1185 WP_255936605.1 glycosyltransferase -
  HB761_RS00520 (HB761_00505) - 93852..95024 (+) 1173 WP_255936607.1 glycosyltransferase family 4 protein -
  HB761_RS00525 (HB761_00510) - 95017..96438 (+) 1422 WP_255936609.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 57397.42 Da        Isoelectric Point: 6.1663

>NTDB_id=433034 HB761_RS00505 WP_255936600.1 89912..91453(+) (luxO) [Vibrio campbellii strain LJC014]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIESNKPQLIILDLKLPDMSGEDVLDWINENEIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPIKADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATIDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VMLAKHFLLTYSKQDKKKFKHIGNDVQHVIKSYDWPGNVRQLQNIIRTIVVLNDDDKVTLTHLPVQLTRKPKKTPSVSPA
NAESAEETSFITEHTYSVQNEASPTSEPTSAACSFSEPESQPTISGVQRASVYFNSDGSIRPMWKVEREAIQNAIAYCDG
NVLNAAVMLELSPSTVYRKKQAWEADEANLKQS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=433034 HB761_RS00505 WP_255936600.1 89912..91453(+) (luxO) [Vibrio campbellii strain LJC014]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTACAAGCAGTACGTCAAAGATGAACCTTA
CGACATTTTTCACGTTGAAACTGGCCGTGAGGCGATTCAATTCATTGAGAGCAACAAACCACAACTTATTATTCTCGACC
TAAAACTTCCAGACATGTCCGGTGAAGACGTTCTTGATTGGATTAATGAGAATGAGATTCCAACCTCTGTCATCATCGCA
ACGGCGCATGGTAGCGTTGATCTAGCCGTCAACCTGATCCAGAAAGGCGCAGAAGATTTCCTAGAAAAGCCCATCAAGGC
AGATCGTTTGAAAACCTCCGTTGCCTTGCATTTAAAACGCGCCAAACTAGAAAATCTCGTCGAGAACATTCAATCGACTT
TCGATCGTCACAACTATCACGGATTTATTGGCTCTAGTCTTCCAATGCAGGCGGTTTACAAAACCATTGATGCAGTTGCC
CCGACCTCAGCTAGCGTATTTATCGTTGGTGAAAGTGGTACAGGTAAAGAAGTGTGTGCCGAAGCGGTTCACCGACAAAG
TGATCGCAGAGACAAGCCATTCATTGCAATTAACTGCGGCGCTATCCCTCGTGATTTGATGGAAAGCGAAATATTTGGCC
ATGTAAAGGGGGCTTTCACTGGCGCTACCATCGATCGTAAAGGTGCAGCGACCCTTGCTCATGGTGGCACACTATTCTTG
GACGAACTGTGTGAAATGGAGCTAGAGATGCAGAAAAAGTTATTACGCTTTCTGCAAACGGGAACCTACACGCCTCTCGG
GGGCACCAAAGAGATGAAAGTCGATGTTCGTATTATCTGTGCAACCAACAGAGACCCTCTGAAAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTGTATTATCGCGTTCATGTCGTCCCCATCGACATGCCGCCGCTAAGAGAAAGAGGCAGTGACATT
GTCATGCTAGCGAAGCACTTTTTGCTCACTTATTCCAAACAAGATAAGAAGAAGTTCAAACACATCGGTAACGACGTTCA
GCATGTCATTAAGAGCTACGACTGGCCAGGGAATGTTCGCCAGCTACAAAATATCATTCGTACCATTGTTGTATTAAATG
ATGACGATAAGGTAACGCTAACGCACTTGCCTGTTCAACTGACTCGTAAGCCGAAAAAGACGCCTTCTGTATCGCCTGCG
AATGCTGAGAGCGCAGAGGAAACAAGCTTCATTACCGAACATACTTACTCCGTGCAGAATGAAGCCTCCCCAACCTCAGA
GCCAACAAGCGCCGCCTGTTCTTTCTCTGAGCCTGAAAGCCAACCAACTATCTCTGGAGTACAAAGGGCTTCAGTCTATT
TCAATTCAGACGGCAGTATTCGTCCGATGTGGAAAGTCGAGCGAGAGGCGATTCAAAACGCAATTGCTTACTGTGATGGA
AACGTACTTAACGCTGCGGTGATGTTGGAACTCAGCCCCTCAACGGTCTATCGCAAAAAACAAGCTTGGGAAGCGGATGA
AGCTAATCTCAAACAATCTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(463-499)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.598

97.076

0.481