Detailed information NTG0433017

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HB760_RS12785
• Genome accession: NZ_CP050463
• Coordinates: 2742088..2743074 (-)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain LJC015
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2737088..2748074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB760_RS12770 (HB760_12685)	recA	2737628..2738671 (-)	1044	WP_005531686.1	recombinase RecA	Machinery gene
HB760_RS12775 (HB760_12690)	pncC	2738872..2739354 (-)	483	WP_005531683.1	nicotinamide-nucleotide amidase	-
HB760_RS12780 (HB760_12695)	mutS	2739440..2742001 (+)	2562	WP_255899244.1	DNA mismatch repair protein MutS	-
HB760_RS12785 (HB760_12700)	rpoS	2742088..2743074 (-)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
HB760_RS12790 (HB760_12705)	-	2743155..2744078 (-)	924	WP_255899242.1	peptidoglycan DD-metalloendopeptidase family protein	-
HB760_RS12795 (HB760_12710)	-	2744093..2744719 (-)	627	WP_255899240.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HB760_RS12800 (HB760_12715)	surE	2744719..2745495 (-)	777	WP_255899238.1	5'/3'-nucleotidase SurE	-
HB760_RS12805 (HB760_12720)	truD	2745495..2746538 (-)	1044	WP_255899237.1	tRNA pseudouridine(13) synthase TruD	-
HB760_RS12810 (HB760_12725)	ispF	2746584..2747060 (-)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HB760_RS12815 (HB760_12730)	ispD	2747075..2747785 (-)	711	WP_255899235.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HB760_RS12820 (HB760_12735)	ftsB	2747787..2748068 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=433017 HB760_RS12785 WP_005425361.1 2742088..2743074(-) (rpoS) [Vibrio campbellii strain LJC015]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=433017 HB760_RS12785 WP_005425361.1 2742088..2743074(-) (rpoS) [Vibrio campbellii strain LJC015]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGTATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCGGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTTACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAGCGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATATAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGGCGTGAGATTGGCCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTTGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACTTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857