Detailed information NTG0433008

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: HB760_RS12350
• Genome accession: NZ_CP050463
• Coordinates: 2644000..2647386 (+)
• Length: 1128 a.a.
• NCBI ID: WP_255899325.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LJC015
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2639000..2652386

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB760_RS12330 (HB760_12245)	erpA	2639341..2639682 (-)	342	WP_005425270.1	iron-sulfur cluster insertion protein ErpA	-
HB760_RS12335 (HB760_12250)	hemL	2639929..2641224 (+)	1296	WP_005425271.1	glutamate-1-semialdehyde 2,1-aminomutase	-
HB760_RS12340 (HB760_12255)	-	2641585..2642670 (+)	1086	WP_255899329.1	AI-2E family transporter	-
HB760_RS12345 (HB760_12260)	rsmC	2642747..2643772 (+)	1026	WP_255899327.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
HB760_RS12350 (HB760_12265)	chiS	2644000..2647386 (+)	3387	WP_255899325.1	response regulator	Regulator
HB760_RS12355 (HB760_12270)	-	2648208..2649890 (+)	1683	WP_005531772.1	ABC transporter substrate-binding protein	-
HB760_RS12360 (HB760_12275)	-	2650060..2651046 (+)	987	WP_005446316.1	ABC transporter permease	-
HB760_RS12365 (HB760_12280)	-	2651049..2652074 (+)	1026	WP_010649800.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127247.04 Da
• Isoelectric Point: 5.4469

>NTDB_id=433008 HB760_RS12350 WP_255899325.1 2644000..2647386(+) (chiS) [Vibrio campbellii strain LJC015]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLEEQSTSHLLSVRDTKQQQIIDYFAAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGHDIDEARENAQQRYIKGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDIDGNVTYSINKDDNFGTNLLSGRYKDTALGKTFKRLSEDVSARRKVNEDYTPVVVSDFDIENGKQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIAEINRDSSIDTLLVGSDHKPRTINTKQEDIQNSLEIVDKALAGETEVGTYSNRLGEE
MIAAFAPIETRGLTWALVVQLPEKEAFARVHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNEELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGAIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSGHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATVVDDQVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEKEIKATESLAARGHFQIPEATFNNNDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLTASQAEMRHIENKLLESELRQRAEVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKFLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDKDQLQKLKELGGEFTRLADKALGNKKDKQELMREVLVDTMTHA
LEYWESVTGETKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYVEAQRD
KMQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=433008 HB760_RS12350 WP_255899325.1 2644000..2647386(+) (chiS) [Vibrio campbellii strain LJC015]
ATGTTTAAATTCTACAAAAAGCAGAAATTTAAGCGCCTGCAAAGCACGCTAATGACCGCGTTTTTGGTTCTTAGTATTAC
GCCACTGACGATCACTGCTATTTTCTTCCTCCAATCCCACAGTAAAGATTTGGAAGAACAGAGCACATCCCACTTGCTCT
CAGTCCGTGATACCAAACAACAACAGATCATCGACTACTTTGCAGCTCAAGAAACCGAAGTTATGGGCTTTGTTCGCTCA
GAATTGGCTTATGCCAGTGGCGGACGCTTCTACGGTTTGGTCAATGCCTTTAGCCGATTAGGCCACGACATCGACGAAGC
AAGAGAGAATGCACAGCAACGCTATATCAAAGGCAGCGGCGATCAAATCAAAACGTCGATTTTACCGGAATCTTCCAACT
ACGTTGGTAGTGAGCGTTATCGTCTTCTGCATAAACGTTATCACTGGGCTTACCTAGAGCTATTAAAGCGCTCTGATTTC
AACGATATTTTATTAGTTGATATCGACGGTAACGTTACTTATTCGATCAATAAAGATGATAACTTCGGCACCAACCTCCT
CAGCGGCCGTTACAAAGACACCGCTTTGGGAAAAACATTTAAACGCCTCTCCGAGGATGTAAGCGCGCGCCGAAAAGTGA
ATGAAGATTACACGCCTGTCGTGGTATCCGACTTTGACATTGAAAACGGTAAGCAAGTCGCTTGGTTGGGTGCGCCTATT
GTCCAGCAAGGCTATCTGCACAGCTATGCAATGTTCCGCTTGCCGAACAATGGCATCACAAAGCTGATTGCAGAAATCAA
TCGTGACTCTTCAATTGATACCTTATTAGTTGGCAGTGACCACAAACCTCGTACCATCAACACCAAGCAAGAAGACATCC
AAAACAGTTTAGAGATCGTCGACAAAGCTTTAGCTGGCGAAACGGAAGTGGGCACTTACAGCAACCGTCTAGGCGAAGAG
ATGATTGCGGCATTTGCACCTATTGAGACTCGCGGTCTCACTTGGGCTCTTGTTGTACAGCTTCCTGAGAAAGAGGCCTT
TGCACGTGTCCATCAGCTCGAGAAACTGTTTGTCATTGCTATGCTAATAGCGATCATCTTGGTTGTGATTGCTTCACACT
ACTTATCTAATTTCATCACCTCTCCGCTGCTTAAGCTAACTTGGGCAGCAGAGAAAGTATCTGCCGGCGATCTGGACGAA
ACCACCTTTAATACCGAGCGTAAAGATGAAATCGGTCGACTCGCAATCAGCTTTGAGCGTATGCAGCGTTCAATTCGTGA
AAAGATTCAAACCATCAAGCAACAAAACGAAGAGCTAGAGAGCAACATCAAACTGATCCAAAAGCAAAACGAAGAATTGC
AGTTGGCAGATAAGCTGAAAGATGAATTCCTAGCAACGACGTCTCACGAGTTGCGCACACCATTGCACGGTATGGTTGGC
ATTGCAGAGACACTGGTGTCTGGTGCAAATGGCGCGATACCTGCAAGCCAGAAGTACCAATTGGACATCATCATCAAGAG
TGGTCAGCGCCTAGCAAACCTCGTTGATGATCTATTGGATTACCACAAGATGCGCTACGGCAGCATGGATATCCAAAAGT
CTGCAGTGAGCCTAGCAAGTGCAACACGCTTGGTTCTAGAGCTTTCTGGTCACCTATTGGGTAACAAAACCATCCGCATC
ATTAACCAAGTGCCAGCGGATCTGAAAGCAGTCTCAGCAGATCCTCAGCGTTTGGAACAAGTACTGTATAACTTGATTGG
CAACGCTATTAAGTACACTTCAGAAGGCAAAATCGTCATCTCAGCGACCGTTGTAGACGATCAAGTCCGAGTACAAGTGG
TCGATACTGGTCAGGGTATTCCTGCTGAGCACTTAGAGCACATCTTTGAACCTCTCATCCAAGCTGGTCAAGATGCTAGC
CGTTACCGTCAAGGTGCAGGACTGGGTCTATCCATCAGCCGTCAACTTATCGAGTTGATGGGCGGTTCATTGTATGTCAG
TAGCCAACCTATGGTCGGAACGACATTCAGCTTCACCTTGCCACTCGCTAGTGAAAAAGAAATCAAAGCGACGGAAAGCC
TTGCCGCACGCGGGCATTTCCAAATCCCTGAGGCGACATTTAACAACAATGACGACTTGTCTCTACCAGAAAACCCAGAT
GGTCCATTGCTGTACGTTGCTGATGATGAGCCCGTCAACCTTCGCGTTCTTGAAAGCTTCTTAAGGCTTGAAGGCTACCG
AGTTCGTACCATTTCAGACGGCCCTGAGACACTCGCTTTAATTGAGCAAGAAAAGCCAGAGTTGCTGCTACTGGATATTA
TGATGCCAGGCATGAGCGGCTATCAGGTTTGTAGTGAACTGCGTGAAACTTACGATCATGCAGAGCTACCAATCATTATG
CTCACAGCGCTAAGCCAAACCGAAGACCGCGTTAGGGGCTTTGAAGCGGGAGCGAACGATTACCTAACCAAACCATTTAA
CAAGCAAGAGCTCGCGGCACGTATTCAGGCCCACTTGACGGCAAGTCAGGCTGAAATGCGCCACATCGAGAACAAGTTAC
TGGAATCAGAGCTACGCCAGCGTGCTGAAGTCGAAGCCAGCCTGCTCGAGACACAAGGTAGACTGCTAGAACAGCTAGAA
TCGGCACCTGAGGCGATTATTTGTCTTCGTGAAGATCAACGTATTCGCTTTGCTAACGAAGCAGCATGTAAGCTATTTAA
ACGTAGCCTAGAACAGCTAAAACGTTCTTCCGCTGATGAGCTAATTGCACCTAAGTTCCTTACGGTTAAGCAGCCGCACT
ACTGTGGCAAGATTGATATCTACATCGAAGATATCCGTCAAAACATTGAAGCAGACATCCTCAAGCTGCCTGAAGGCTCT
GGTTTAGACGTCATGTATATCTTCAATGTAGGAGGCGGCGCGAATGCAGCTCGTATCCATAACTTAGAGACGGCCGTTGA
AGTACTTTCAAGTTACGCATTTGATGGCGACAAAGACCAGCTGCAGAAACTGAAAGAACTTGGCGGTGAGTTTACTCGCC
TTGCAGATAAAGCATTGGGTAACAAAAAGGACAAACAAGAGCTGATGCGCGAAGTATTAGTCGATACGATGACTCACGCA
TTGGAATATTGGGAATCGGTGACTGGAGAAACCAAGTTTGCCTTTGCTGAACAAAGTGGTTTATGGCGCGTCTACCTCGA
CCGTAGTACATTGCAAACTCGTACGCTCGATAAATACATGCGTATTGAGACTTTGCCTAAGACACCGCGCTGGAGGACAG
TACTAAGCTCAATTGAATTCATTCTGGAGCACTGTAAAGAACAAAGCCCAGAACGCGCTTATGTAGAGGCACAGCGCGAT
AAGATGCAAAGACTCCTTACGAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.705	100	0.768