Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   HB760_RS10515 Genome accession   NZ_CP050463
Coordinates   2241057..2242460 (-) Length   467 a.a.
NCBI ID   WP_256113442.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC015     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2236057..2247460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB760_RS10480 (HB760_10405) moaE 2236589..2237044 (-) 456 WP_010645711.1 molybdopterin synthase catalytic subunit MoaE -
  HB760_RS10485 (HB760_10410) moaD 2237046..2237303 (-) 258 WP_255899758.1 molybdopterin synthase sulfur carrier subunit -
  HB760_RS10490 (HB760_10415) moaC 2237303..2237779 (-) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  HB760_RS10495 (HB760_10420) moaB 2237806..2238318 (-) 513 WP_255899755.1 molybdenum cofactor biosynthesis protein B -
  HB760_RS10500 (HB760_10425) moaA 2238419..2239408 (-) 990 WP_005531402.1 GTP 3',8-cyclase MoaA -
  HB760_RS10505 (HB760_10430) - 2239706..2240599 (+) 894 WP_255899752.1 YvcK family protein -
  HB760_RS10510 (HB760_10435) luxU 2240716..2241060 (-) 345 WP_255899750.1 quorum-sensing phosphorelay protein LuxU -
  HB760_RS10515 (HB760_10440) luxO 2241057..2242460 (-) 1404 WP_256113442.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  HB760_RS10520 (HB760_10445) uvrB 2242803..2244833 (-) 2031 WP_255899748.1 excinuclease ABC subunit UvrB -
  HB760_RS10530 (HB760_10455) - 2245644..2246084 (-) 441 WP_255899746.1 hypothetical protein -
  HB760_RS10535 (HB760_10460) - 2246104..2247435 (-) 1332 WP_255899743.1 excinuclease ABC subunit B -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52164.70 Da        Isoelectric Point: 5.8849

>NTDB_id=433007 HB760_RS10515 WP_256113442.1 2241057..2242460(-) (luxO) [Vibrio campbellii strain LJC015]
MQQITEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEVDRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=433007 HB760_RS10515 WP_256113442.1 2241057..2242460(-) (luxO) [Vibrio campbellii strain LJC015]
ATGCAACAAATAACAGAAGGTCAAAAGTCTCGTTATCTACTAATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATTCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACAGCCCATGGCTCTATCGATACTGCGGTAGAGGCGATGCGTCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAAGTAGACCGTTTACGTGTCACGGTGAATAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTACCGTACC
ATTGACTCGGCAGCAAGCAGTAAAGCGAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAAGTGTGTGCCGAAGC
GATTCACGCAGCAAGTAAACGTGGTGATAAGCCGTTTATCGCCATCAACTGTGCGGCAATCCCGAAAGACCTTATTGAAA
GTGAGCTTTTTGGTCACGTAAAAGGTGCGTTTACTGGTGCTGCGAATGACCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAGCTCTGTGAAATGGACTTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTACGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTTCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTGCACCTTCCGCCGCTGCGTGAG
CGTGGTGAAGATGTTATTGAAATTGCATACTCGCTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCGGGTAACGTTCGCCAATTGCAAAACGTATTACGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATTATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTTAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.161

95.931

0.827