Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HB760_RS06505 Genome accession   NZ_CP050463
Coordinates   1423001..1424422 (-) Length   473 a.a.
NCBI ID   WP_005528196.1    Uniprot ID   A7MVI1
Organism   Vibrio campbellii strain LJC015     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1418001..1429422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB760_RS06480 (HB760_06450) purT 1418591..1419766 (-) 1176 WP_256113688.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  HB760_RS06485 (HB760_06455) - 1419975..1420673 (+) 699 WP_256113689.1 cytidine deaminase -
  HB760_RS06490 (HB760_06460) cdd 1420737..1421624 (-) 888 WP_255958025.1 cytidine deaminase -
  HB760_RS06495 (HB760_06465) - 1421889..1422566 (-) 678 WP_009705896.1 LrgB family protein -
  HB760_RS06500 (HB760_06470) - 1422568..1422942 (-) 375 WP_012127845.1 CidA/LrgA family protein -
  HB760_RS06505 (HB760_06475) sbcB 1423001..1424422 (-) 1422 WP_005528196.1 exodeoxyribonuclease I Machinery gene
  HB760_RS06510 (HB760_06480) - 1424584..1425264 (-) 681 WP_255901332.1 DUF1826 domain-containing protein -
  HB760_RS06515 (HB760_06485) - 1425492..1426865 (-) 1374 WP_255901331.1 L-cystine transporter -
  HB760_RS06520 (HB760_06490) - 1427059..1427754 (-) 696 Protein_1248 NAD(P)H-binding protein -
  HB760_RS06525 (HB760_06495) - 1428419..1429030 (+) 612 WP_255901329.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54483.76 Da        Isoelectric Point: 4.9244

>NTDB_id=433005 HB760_RS06505 WP_005528196.1 1423001..1424422(-) (sbcB) [Vibrio campbellii strain LJC015]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPDAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVVATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=433005 HB760_RS06505 WP_005528196.1 1423001..1424422(-) (sbcB) [Vibrio campbellii strain LJC015]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGTCCAAG
CCAATTCGCTGGCGTTCGTACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGACGCCGCTCTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGCATTCGCTTCGATGA
CGAAGTCACACGTTACACCTGTTATCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAGCATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGGTTGC
AACGATTGAGATGGCGAAGAAAGTGAAGGCCGCTCAACCAAAACTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTGTCGGGCATGCTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCAGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ATCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCAGGCACCTTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7MVI1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791