Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   HCC49_RS17555 Genome accession   NZ_CP050462
Coordinates   3544093..3545238 (+) Length   381 a.a.
NCBI ID   WP_077722992.1    Uniprot ID   -
Organism   Bacillus velezensis strain Htq6     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3539093..3550238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCC49_RS17535 (HCC49_17535) - 3539990..3540418 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  HCC49_RS17540 (HCC49_17540) - 3540572..3541084 (+) 513 Protein_3423 bacteriocin biosynthesis protein AlbG -
  HCC49_RS17545 (HCC49_17545) - 3541091..3542467 (-) 1377 WP_167860505.1 YncE family protein -
  HCC49_RS17550 (HCC49_17550) - 3542507..3543862 (-) 1356 WP_167860506.1 YncE family protein -
  HCC49_RS17555 (HCC49_17555) rapF 3544093..3545238 (+) 1146 WP_077722992.1 tetratricopeptide repeat protein Regulator
  HCC49_RS17560 (HCC49_17560) - 3545222..3545341 (+) 120 WP_015387559.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  HCC49_RS17565 (HCC49_17565) - 3545540..3545743 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  HCC49_RS17570 (HCC49_17570) - 3545757..3545960 (+) 204 WP_069473623.1 hypothetical protein -
  HCC49_RS19535 (HCC49_17575) - 3545995..3546174 (+) 180 Protein_3430 DUF4177 domain-containing protein -
  HCC49_RS17580 (HCC49_17580) - 3546369..3546650 (+) 282 WP_014306021.1 hypothetical protein -
  HCC49_RS17585 (HCC49_17585) - 3546694..3547206 (+) 513 WP_032859656.1 stage II sporulation protein M -
  HCC49_RS17595 (HCC49_17595) - 3547797..3548015 (-) 219 WP_071182043.1 LuxR C-terminal-related transcriptional regulator -
  HCC49_RS17600 (HCC49_17600) speB 3548183..3549055 (-) 873 WP_167860508.1 agmatinase -
  HCC49_RS17605 (HCC49_17605) speE 3549115..3549945 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45541.70 Da        Isoelectric Point: 4.6057

>NTDB_id=432987 HCC49_RS17555 WP_077722992.1 3544093..3545238(+) (rapF) [Bacillus velezensis strain Htq6]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQGNYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKMMYADLEDFALDVAKYYHERENFEKAAAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=432987 HCC49_RS17555 WP_077722992.1 3544093..3545238(+) (rapF) [Bacillus velezensis strain Htq6]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTATTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCTTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTGGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGGAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATTATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGTCGAATATGAATTTTTAGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAAATGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAGAATTTCGAGAAGGCTGCTGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.74

100

0.787
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567