Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HCC49_RS12665 Genome accession   NZ_CP050462
Coordinates   2596686..2597438 (-) Length   250 a.a.
NCBI ID   WP_070082169.1    Uniprot ID   -
Organism   Bacillus velezensis strain Htq6     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2591686..2602438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCC49_RS12640 (HCC49_12640) mreC 2592122..2592985 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  HCC49_RS12645 (HCC49_12645) mreB 2593016..2594029 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  HCC49_RS12650 (HCC49_12650) radC 2594121..2594816 (-) 696 WP_007408165.1 DNA repair protein RadC -
  HCC49_RS12655 (HCC49_12655) - 2594848..2595417 (-) 570 WP_070082167.1 Maf family protein -
  HCC49_RS12660 (HCC49_12660) - 2595558..2596559 (-) 1002 WP_146277259.1 SPOR domain-containing protein -
  HCC49_RS12665 (HCC49_12665) comC 2596686..2597438 (-) 753 WP_070082169.1 A24 family peptidase Machinery gene
  HCC49_RS12670 (HCC49_12670) - 2597578..2598870 (-) 1293 WP_077722653.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  HCC49_RS12675 (HCC49_12675) - 2598929..2601571 (-) 2643 WP_060674740.1 valine--tRNA ligase -
  HCC49_RS12680 (HCC49_12680) - 2602024..2602215 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27106.78 Da        Isoelectric Point: 9.2521

>NTDB_id=432970 HCC49_RS12665 WP_070082169.1 2596686..2597438(-) (comC) [Bacillus velezensis strain Htq6]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=432970 HCC49_RS12665 WP_070082169.1 2596686..2597438(-) (comC) [Bacillus velezensis strain Htq6]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGTTTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGTCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584