Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   HCC49_RS10145 Genome accession   NZ_CP050462
Coordinates   2084272..2084880 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain Htq6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2079272..2089880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCC49_RS10105 (HCC49_10105) - 2080325..2080831 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  HCC49_RS10110 (HCC49_10110) - 2080970..2081383 (+) 414 WP_003153535.1 hypothetical protein -
  HCC49_RS10115 (HCC49_10115) - 2081413..2081847 (-) 435 WP_003153534.1 YppG family protein -
  HCC49_RS10120 (HCC49_10120) - 2082034..2082216 (+) 183 WP_003153532.1 YppF family protein -
  HCC49_RS10125 (HCC49_10125) - 2082255..2082623 (-) 369 WP_070082017.1 YppE family protein -
  HCC49_RS10130 (HCC49_10130) - 2082669..2082914 (-) 246 WP_039063257.1 DUF5446 family protein -
  HCC49_RS10135 (HCC49_10135) sspM 2083120..2083224 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  HCC49_RS10140 (HCC49_10140) - 2083268..2084230 (-) 963 WP_167860236.1 DUF2515 domain-containing protein -
  HCC49_RS10145 (HCC49_10145) recU 2084272..2084880 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  HCC49_RS10150 (HCC49_10150) - 2084919..2087702 (+) 2784 WP_167860237.1 PBP1A family penicillin-binding protein -
  HCC49_RS10155 (HCC49_10155) - 2087780..2088271 (-) 492 WP_070082019.1 YpoC family protein -
  HCC49_RS10160 (HCC49_10160) nth 2088268..2088927 (-) 660 WP_003153517.1 endonuclease III -
  HCC49_RS10165 (HCC49_10165) dnaD 2088946..2089644 (-) 699 WP_070082021.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=432952 HCC49_RS10145 WP_003153521.1 2084272..2084880(+) (recU) [Bacillus velezensis strain Htq6]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=432952 HCC49_RS10145 WP_003153521.1 2084272..2084880(+) (recU) [Bacillus velezensis strain Htq6]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896