Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   HCC49_RS06930 Genome accession   NZ_CP050462
Coordinates   1310262..1310858 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain Htq6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1305262..1315858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCC49_RS06900 (HCC49_06900) - 1305476..1305931 (+) 456 WP_038463794.1 flavodoxin -
  HCC49_RS06905 (HCC49_06905) dapD 1306013..1306723 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  HCC49_RS06910 (HCC49_06910) - 1306794..1307918 (+) 1125 WP_038463797.1 N-acetyldiaminopimelate deacetylase -
  HCC49_RS06915 (HCC49_06915) - 1307979..1308224 (+) 246 WP_003154596.1 YkuS family protein -
  HCC49_RS06920 (HCC49_06920) - 1308258..1309064 (-) 807 WP_108724997.1 mechanosensitive ion channel family protein -
  HCC49_RS06925 (HCC49_06925) - 1309353..1309811 (+) 459 WP_012117446.1 TlpA disulfide reductase family protein -
  HCC49_RS06930 (HCC49_06930) rok 1310262..1310858 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  HCC49_RS06935 (HCC49_06935) - 1310879..1311871 (-) 993 WP_007409627.1 hypothetical protein -
  HCC49_RS06940 (HCC49_06940) - 1312017..1312619 (+) 603 WP_167860101.1 molybdenum cofactor guanylyltransferase -
  HCC49_RS06945 (HCC49_06945) - 1312671..1313690 (+) 1020 WP_146276675.1 molybdopterin-synthase adenylyltransferase MoeB -
  HCC49_RS06950 (HCC49_06950) glp 1313708..1315000 (+) 1293 WP_063174789.1 gephyrin-like molybdotransferase Glp -
  HCC49_RS06955 (HCC49_06955) mobB 1314961..1315482 (+) 522 WP_041482361.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=432946 HCC49_RS06930 WP_003154591.1 1310262..1310858(+) (rok) [Bacillus velezensis strain Htq6]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=432946 HCC49_RS06930 WP_003154591.1 1310262..1310858(+) (rok) [Bacillus velezensis strain Htq6]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATTAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843