Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HCC49_RS00185 Genome accession   NZ_CP050462
Coordinates   33819..34109 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain Htq6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 28819..39109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCC49_RS00145 (HCC49_00145) darA 28836..29165 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  HCC49_RS00150 (HCC49_00150) - 29178..29618 (+) 441 WP_004264730.1 DUF327 family protein -
  HCC49_RS00155 (HCC49_00155) holB 29630..30619 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  HCC49_RS00160 (HCC49_00160) ricT 30622..31449 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  HCC49_RS00165 (HCC49_00165) yabA 31464..31823 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  HCC49_RS00170 (HCC49_00170) - 31884..32627 (+) 744 WP_044052730.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  HCC49_RS00175 (HCC49_00175) - 32614..32913 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  HCC49_RS00180 (HCC49_00180) rsmI 32888..33769 (+) 882 WP_044052729.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HCC49_RS00185 (HCC49_00185) abrB 33819..34109 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  HCC49_RS00190 (HCC49_00190) metG 34592..36583 (+) 1992 WP_025854082.1 methionine--tRNA ligase -
  HCC49_RS00195 (HCC49_00195) - 36659..37426 (+) 768 WP_025854081.1 TatD family hydrolase -
  HCC49_RS00200 (HCC49_00200) - 37561..38886 (+) 1326 WP_094247906.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=432919 HCC49_RS00185 WP_169510469.1 33819..34109(-) (abrB) [Bacillus velezensis strain Htq6]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=432919 HCC49_RS00185 WP_169510469.1 33819..34109(-) (abrB) [Bacillus velezensis strain Htq6]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979