Detailed information NTG0432814

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HB674_RS17650
• Genome accession: NZ_CP050448
• Coordinates: 3581974..3583119 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain BIM B-1312D
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3576974..3588119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HB674_RS17630 (HB674_17630)	-	3577871..3578299 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
HB674_RS17635 (HB674_17635)	-	3578453..3578965 (+)	513	Protein_3427	bacteriocin biosynthesis protein AlbG	-
HB674_RS17640 (HB674_17640)	-	3578972..3580348 (-)	1377	WP_032875890.1	YncE family protein	-
HB674_RS17645 (HB674_17645)	-	3580388..3581743 (-)	1356	WP_032875887.1	YncE family protein	-
HB674_RS17650 (HB674_17650)	rapF	3581974..3583119 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
HB674_RS17655 (HB674_17655)	-	3583103..3583222 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
HB674_RS17660 (HB674_17660)	speB	3583345..3584217 (-)	873	WP_032875884.1	agmatinase	-
HB674_RS17665 (HB674_17665)	speE	3584276..3585106 (-)	831	WP_003151052.1	spermidine synthase	-
HB674_RS17670 (HB674_17670)	-	3585306..3587378 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
HB674_RS17675 (HB674_17675)	-	3587403..3587836 (-)	434	Protein_3435	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=432814 HB674_RS17650 WP_074534220.1 3581974..3583119(+) (rapF) [Bacillus velezensis strain BIM B-1312D]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=432814 HB674_RS17650 WP_074534220.1 3581974..3583119(+) (rapF) [Bacillus velezensis strain BIM B-1312D]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541