Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   SCIM_RS00265 Genome accession   NC_018073
Coordinates   43756..45684 (-) Length   642 a.a.
NCBI ID   WP_003077795.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 38756..50684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS00245 (SCIM_0025) purM 39965..40987 (+) 1023 WP_003077841.1 phosphoribosylformylglycinamidine cyclo-ligase -
  SCIM_RS00250 (SCIM_0026) purN 40987..41550 (+) 564 WP_003077467.1 phosphoribosylglycinamide formyltransferase -
  SCIM_RS00255 (SCIM_0027) - 41543..42136 (+) 594 WP_003077587.1 hypothetical protein -
  SCIM_RS00260 (SCIM_0028) purH 42156..43703 (+) 1548 WP_003077457.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  SCIM_RS00265 (SCIM_0029) lytF 43756..45684 (-) 1929 WP_003077795.1 GBS Bsp-like repeat-containing protein Regulator
  SCIM_RS00270 (SCIM_0030) - 45928..46755 (+) 828 WP_003077688.1 sce7726 family protein -
  SCIM_RS00275 (SCIM_0031) - 46768..47715 (+) 948 WP_003077536.1 sce7725 family protein -
  SCIM_RS00280 (SCIM_0032) - 47712..48800 (+) 1089 WP_003077810.1 RES family NAD+ phosphorylase -
  SCIM_RS00285 (SCIM_0033) purD 49089..50348 (+) 1260 WP_003077821.1 phosphoribosylamine--glycine ligase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 71541.20 Da        Isoelectric Point: 8.7195

>NTDB_id=43270 SCIM_RS00265 WP_003077795.1 43756..45684(-) (lytF) [Streptococcus intermedius JTH08]
MKKYSQLFLLSSALLSVFSAQLTVQASEANNASKNSNPTTLASDVTVNVSGNSVSINYIRSQAQNPYTVSHAVWSDENGQ
DDLKWYSASQTSTTVDLSQHSGYGTFHVHTYININGKMIGLNGTTFTLNKPTSQTKITTAGQIGQIHFTRNKDQKNSKIV
HAVWSEENGSDDLNWYDAEQEITKFDFSKHKGYGRYFVDTYENKNGKMIYQSGTTFNLEKPNPTIQTSFPEPGIMDIRIK
NVPETIYKLTVPTWSDKNGQDDLQWYAATKNPDGSYNVRVELKKHNYDTGTYHIHVYGESYVKPEFTGLAGTTVQVRSDQ
LPSEEEQKPLFSVENINQEQGTYTVKIKETSKSKSIQSVRVPIWSTTNQSNIKWYTATDNGDGTFSTTFNIRNHQALSGT
YINHIYVKYKDGSEHSYATDSVSMSAEQIKTKVAVTKRSIYNYEVTVTDAYGDGNIILPTWSEVNGQDDIQWYPATKTGN
GIYKFTIDTQKHTGSGLFHTHVYRNLNGKMIGLTGTSYQVEKPVISFQPNYAAATTYPKGQCTWGAKALAPWAGNYWGNG
GDWATSARRAGFKTGTTPQVGAIICWTDGSYGHVGVVTHVASNTRIQIQEANYAGKQYIGNFRGWFNPHAAGQGVVSYIY
PK

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=43270 SCIM_RS00265 WP_003077795.1 43756..45684(-) (lytF) [Streptococcus intermedius JTH08]
ATGAAAAAATATAGTCAATTATTTTTACTATCCAGCGCCCTTTTGAGTGTTTTTTCAGCTCAACTAACAGTTCAAGCCTC
GGAAGCAAATAATGCTTCAAAAAACTCAAATCCAACAACTCTTGCTAGCGATGTTACTGTCAATGTTTCTGGCAATAGCG
TTTCTATCAACTACATACGTTCACAAGCCCAAAACCCCTACACCGTTTCCCATGCTGTTTGGTCTGATGAAAATGGGCAA
GATGACCTTAAATGGTATTCCGCATCTCAAACATCAACAACTGTTGATTTGAGCCAACATTCTGGGTACGGTACTTTCCA
TGTCCATACATATATCAACATCAATGGAAAAATGATCGGTTTAAATGGAACGACATTCACTCTGAATAAACCTACTAGTC
AAACAAAAATTACGACAGCTGGACAGATTGGACAAATTCATTTTACACGCAATAAAGATCAAAAAAATTCTAAAATTGTT
CATGCCGTTTGGTCTGAAGAAAATGGTAGTGATGATCTCAACTGGTACGATGCTGAACAGGAAATAACTAAATTTGACTT
TTCCAAACACAAGGGTTATGGGAGATATTTTGTAGATACTTATGAAAATAAAAATGGTAAAATGATTTATCAGTCAGGTA
CCACTTTTAACCTTGAAAAACCAAACCCTACTATCCAAACTAGTTTTCCAGAACCTGGCATCATGGATATTCGGATAAAA
AATGTCCCTGAAACAATCTATAAACTTACTGTTCCAACTTGGTCTGATAAAAACGGACAGGATGATCTTCAATGGTATGC
AGCTACTAAAAATCCTGATGGAAGCTACAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACACAGGAACTTATCACA
TTCATGTTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAACTACGGTACAAGTTCGTTCCGATCAA
TTACCTTCAGAAGAAGAGCAAAAGCCATTATTCTCTGTTGAAAATATCAATCAAGAACAAGGAACATATACGGTCAAAAT
TAAGGAAACTTCAAAATCCAAATCCATTCAATCCGTTCGCGTTCCTATTTGGAGTACTACAAATCAGAGTAATATCAAAT
GGTACACAGCCACTGACAATGGAGACGGAACTTTTTCAACAACCTTTAATATCCGCAATCATCAGGCTTTGTCTGGAACC
TATATCAATCATATTTATGTAAAATATAAAGACGGTAGTGAGCATAGTTATGCAACAGATTCGGTTAGCATGTCCGCAGA
ACAGATAAAAACGAAAGTAGCTGTCACGAAACGCTCGATCTACAATTATGAAGTAACAGTGACAGATGCTTATGGAGATG
GAAATATCATCCTGCCTACCTGGTCTGAAGTCAACGGGCAAGATGATATCCAGTGGTACCCAGCTACTAAAACTGGAAAT
GGTATCTACAAGTTCACTATTGATACGCAAAAACACACTGGTAGCGGGCTTTTCCACACACATGTCTACCGCAATCTCAA
CGGTAAAATGATTGGACTAACAGGTACGAGCTATCAAGTAGAGAAACCTGTTATTTCTTTCCAACCCAATTATGCCGCTG
CAACGACTTATCCAAAAGGTCAATGCACTTGGGGCGCTAAAGCTCTAGCACCTTGGGCTGGAAATTATTGGGGAAATGGT
GGCGATTGGGCTACTAGTGCCAGACGTGCTGGTTTTAAAACAGGAACAACTCCACAAGTCGGAGCCATTATTTGTTGGAC
AGATGGTAGTTACGGACACGTTGGAGTCGTCACTCACGTCGCCTCAAACACACGCATTCAGATTCAAGAGGCAAACTACG
CTGGGAAACAGTACATTGGCAACTTTCGTGGCTGGTTTAATCCCCATGCAGCTGGGCAAGGAGTAGTCAGTTACATTTAT
CCAAAATAA

Domains

Predicted by InterProScan.

GBS Bsp-like repeat (GBS_Bsp-like)

(67-125)

GBS Bsp-like repeat (GBS_Bsp-like)

(230-300)

GBS Bsp-like repeat (GBS_Bsp-like)

(440-516)

GBS Bsp-like repeat (GBS_Bsp-like)

(333-419)

CHAP domain (CHAP)

(535-612)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

43.856

82.399

0.361