Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   HB663_RS17395 Genome accession   NZ_CP050432
Coordinates   3604924..3605250 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain PM194229     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3599924..3610250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB663_RS17375 (HB663_17375) - 3600025..3600654 (-) 630 WP_000219964.1 FHA domain-containing protein -
  HB663_RS17380 (HB663_17380) gspD 3600695..3602971 (-) 2277 WP_001196433.1 type II secretion system secretin GspD -
  HB663_RS17385 (HB663_17385) - 3603013..3603849 (-) 837 WP_000870034.1 type II secretion system protein N -
  HB663_RS17390 (HB663_17390) gspN 3603849..3604592 (-) 744 WP_000730343.1 type II secretion system protein N -
  HB663_RS17395 (HB663_17395) hns 3604924..3605250 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  HB663_RS17400 (HB663_17400) - 3605445..3605885 (-) 441 WP_000661569.1 acyl-CoA thioesterase -
  HB663_RS17405 (HB663_17405) - 3605893..3607086 (-) 1194 WP_000681781.1 hypothetical protein -
  HB663_RS17410 (HB663_17410) - 3607096..3607935 (-) 840 WP_001230210.1 hypothetical protein -
  HB663_RS17415 (HB663_17415) - 3607944..3608711 (-) 768 WP_000897416.1 uroporphyrinogen-III synthase -
  HB663_RS17420 (HB663_17420) hemC 3608716..3609633 (-) 918 WP_031945328.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=432686 HB663_RS17395 WP_000801427.1 3604924..3605250(-) (hns) [Acinetobacter baumannii strain PM194229]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=432686 HB663_RS17395 WP_000801427.1 3604924..3605250(-) (hns) [Acinetobacter baumannii strain PM194229]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGCCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1