Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HB663_RS01680 Genome accession   NZ_CP050432
Coordinates   354378..354851 (+) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain PM194229     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349378..359851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB663_RS01655 (HB663_01655) - 349841..351946 (-) 2106 WP_001117591.1 RelA/SpoT family protein -
  HB663_RS01660 (HB663_01660) - 351986..352116 (-) 131 Protein_314 hypothetical protein -
  HB663_RS01665 (HB663_01665) rpoZ 352155..352433 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HB663_RS01670 (HB663_01670) gmk 352506..353135 (-) 630 WP_000015936.1 guanylate kinase -
  HB663_RS01675 (HB663_01675) ispH 353258..354208 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HB663_RS01680 (HB663_01680) fimU 354378..354851 (+) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HB663_RS01685 (HB663_01685) pilV 354845..355405 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HB663_RS01690 (HB663_01690) pilW 355406..356407 (+) 1002 WP_000079199.1 PilW family protein Machinery gene
  HB663_RS01695 (HB663_01695) pilX 356404..357222 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=432655 HB663_RS01680 WP_001214068.1 354378..354851(+) (fimU) [Acinetobacter baumannii strain PM194229]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=432655 HB663_RS01680 WP_001214068.1 354378..354851(+) (fimU) [Acinetobacter baumannii strain PM194229]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994