Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   BVELS4_RS18255 Genome accession   NZ_CP050424
Coordinates   3692185..3693330 (+) Length   381 a.a.
NCBI ID   WP_167340913.1    Uniprot ID   -
Organism   Bacillus velezensis strain S4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3687185..3698330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVELS4_RS18235 (BVELS4_03655) - 3688083..3688511 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  BVELS4_RS20305 - 3688665..3689176 (+) 512 Protein_3543 bacteriocin biosynthesis protein AlbG -
  BVELS4_RS18245 (BVELS4_03656) - 3689183..3690559 (-) 1377 WP_167340912.1 YncE family protein -
  BVELS4_RS18250 (BVELS4_03657) - 3690599..3691954 (-) 1356 WP_122504248.1 YncE family protein -
  BVELS4_RS18255 (BVELS4_03658) rapF 3692185..3693330 (+) 1146 WP_167340913.1 tetratricopeptide repeat protein Regulator
  BVELS4_RS18260 (BVELS4_03659) phrF 3693314..3693433 (+) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  BVELS4_RS18265 (BVELS4_03660) - 3693631..3693834 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  BVELS4_RS18270 (BVELS4_03661) - 3693848..3694051 (+) 204 WP_007407641.1 hypothetical protein -
  BVELS4_RS18275 (BVELS4_03662) - 3694086..3694271 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  BVELS4_RS18280 (BVELS4_03663) - 3694457..3694738 (+) 282 WP_007407643.1 hypothetical protein -
  BVELS4_RS18285 (BVELS4_03664) - 3694782..3695294 (+) 513 WP_007407644.1 stage II sporulation protein M -
  BVELS4_RS18295 (BVELS4_03666) - 3695885..3696103 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  BVELS4_RS18300 (BVELS4_03667) speB 3696271..3697143 (-) 873 WP_007614448.1 agmatinase -
  BVELS4_RS18305 (BVELS4_03668) speE 3697202..3698032 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45621.69 Da        Isoelectric Point: 4.6084

>NTDB_id=432595 BVELS4_RS18255 WP_167340913.1 3692185..3693330(+) (rapF) [Bacillus velezensis strain S4]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEYGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASTYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=432595 BVELS4_RS18255 WP_167340913.1 3692185..3693330(+) (rapF) [Bacillus velezensis strain S4]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCATAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAATATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCACATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(189-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.215

100

0.782
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564